Hg_chrom6_TN10mRNA_12304
Organism: Heterodera glycines Gene Locus: chr6:6201148-6203660 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.143 | 0.967 | 0.928 | 0.456 | 1.04 | 0.485 | 1.035 | 1.512 | 1.512 | 0.869 | 1.174 | 1.557 | 1.418 | 0.836 | 0.926 | 0.729 | 0.899 | 1.06 | 0.727 | 1.056 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11594
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.068
|
0.909
|
0.031
|
0.201
|
0.043
|
0.076
|
0.097
|
0.087
|
0.064
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010632
|
1.000
|
1.000
|
Hsc_gene_1755.t1
|
Hsc_gene_1755.t1
|
— |
P26443.1 Glutamate dehydrogenase 1, mitochondrial [Mus musculus]
|
KAH7731044.1 glutamate dehydrogenase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006520|GO:0016491|GO:0016639
|
GO:0003674_0.808|GO:0008150_0.786|GO:0003824_0.700|GO:0005575_0.616|GO:0110165_0.614|GO:0016491_0.564|GO:0009987_0.563|GO:0005622_0.531|GO:0008152_0.529|GO:0005737_0.513|GO:0004353_0.510|GO:0016638_0.510|GO:0016639_0.510|GO:0044238_0.505|GO:0016020_0.503
|
IPR006095+140-154_225-247_275-295_404-415+|IPR006096+234-426_236-525+|IPR006097+85-212+|IPR014362+50-528+|IPR033524+148-161+|IPR033922+234-519+|IPR036291+237-527+|IPR046346+30-236+
|
SM00839+236-525+
|
PF00208+234-426+Glutamate/Leucine/Phenylalanine/Valine_dehydrogenase|PF02812+85-212+Glu/Leu/Phe/Val_dehydrogenase,_dimerisation_domain
|
G3DSA:3.40.50.720:FF:000100+234-528+Glutamate_dehydrogenase_1,_mitochondrial
|
PTHR11606+24-526+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-529
|
8s3g_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
58365.940
|
8.513
|
13.000
|
26.654
|
12.665
|
43.289
|
56.711
|
15.312
|
11.342
|
51.040
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
5874.224
|
1804.244
|
4438.178
|
5328.056
|
6121.594
|
6823.420
|
5849.890
|
17589.044
|
1594.184
|
6521.184
|
4409.612
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.071
|
1.425
|
0.371
|
0.169
|
0.171
|
-0.212
|
1.258
|
-1.444
|
-2.137
|
1.892
|
— | — | — |
No JSON data available for plots.