Hg_chrom6_TN10mRNA_12305
Organism: Heterodera glycines Gene Locus: chr6:6203973-6205936 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.069 | 0.885 | 0.652 | 1.261 | 0.832 | 0.933 | 0.946 | 1.261 | 1.388 | 0.942 | 0.954 | 0.901 | 0.832 | 0.827 | 0.849 | 0.798 | 1.679 | 0.832 | 0.556 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11595
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.362
|
0.298
|
0.024
|
0.650
|
0.131
|
0.292
|
0.168
|
0.035
|
0.126
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010633
|
1.000
|
1.000
|
Hsc_gene_1756.t1
|
Hsc_gene_1756.t1
|
— |
Q7NXH5.1 L-threonine 3-dehydrogenase [Chromobacterium violaceum ATCC 12472]
|
KAH7731046.1 alcohol dehydrogenase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.722|GO:0003674_0.654|GO:0003824_0.555|GO:0008152_0.552|GO:0005575_0.526|GO:0009058_0.522|GO:0110165_0.520
|
IPR011032+26-161+|IPR013149+181-318+|IPR013154+41-125+|IPR020843+20-353+|IPR036291+136-323+|IPR050129+28-354+
|
SM00829+20-353+
|
PF00107+181-318+Zinc-binding_dehydrogenase|PF08240+41-125+Alcohol_dehydrogenase_GroES-like_domain
|
— |
PTHR43401+28-354+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;368-370
|
1.000
|
13-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.564
|
40341.420
|
5.473
|
-4.500
|
24.595
|
8.108
|
43.243
|
56.757
|
12.162
|
12.432
|
53.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
4193.193
|
2583.122
|
3674.619
|
3188.263
|
3471.511
|
4482.548
|
4147.009
|
7538.489
|
3858.843
|
4544.001
|
4250.362
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.281
|
0.167
|
— |
0.091
|
0.384
|
— |
0.645
|
-0.719
|
— | — | — | — | — |
No JSON data available for plots.