SCN Proteipedia

Hg_chrom6_TN10mRNA_12306

Organism: Heterodera glycines Gene Locus: chr6:6206235-6209287 Feature type: polypeptide

Protein Sequence

Length: 414

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.562	1.348	1.186	0.5	0.644	1.548	0.518	1.57	1.181	1.175	0.622	1.137	0.805	1.765	1.232	1.07	1.069	0.878	0.372	1.634	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11596	—	—	1.111	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	12-38	0.846	—	—	—	—	0.000	—	—	0.452	0.095	0.007	0.502	0.188	0.320	0.250	0.046	0.162	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004411	2.000	1.000	Hsc_gene_1757.t1	Hsc_gene_1757.t1	—	Q99816.2 Tumor susceptibility gene 101 protein [Homo sapiens]	KAH7731012.1 Ubiquitin E2 variant [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0015031\|GO:0036211	GO:0005575_0.925\|GO:0110165_0.915\|GO:0008150_0.871\|GO:0016020_0.832\|GO:0009987_0.829\|GO:0043226_0.776\|GO:0005622_0.772\|GO:0003674_0.745\|GO:0005488_0.726\|GO:0043227_0.720\|GO:0043229_0.692\|GO:0065007_0.691\|GO:0050789_0.690\|GO:0005515_0.682\|GO:0005737_0.652\|GO:0050794_0.642\|GO:0043231_0.636\|GO:0008152_0.590\|GO:0019222_0.590\|GO:0044238_0.589\|GO:0043170_0.588\|GO:0060255_0.577\|GO:0080090_0.573\|GO:0048518_0.571\|GO:0044237_0.566\|GO:0031323_0.556\|GO:0031982_0.551\|GO:0048522_0.549\|GO:0071944_0.546\|GO:0051179_0.538\|GO:0009058_0.530\|GO:0009889_0.529\|GO:0031326_0.529\|GO:0044249_0.529\|GO:0009059_0.528\|GO:0010467_0.528\|GO:0010556_0.524\|GO:0051234_0.521\|GO:0006139_0.520\|GO:0010468_0.519\|GO:0090304_0.519\|GO:0005886_0.518\|GO:0006810_0.518\|GO:0051641_0.516\|GO:0034654_0.515\|GO:0016070_0.511\|GO:0141187_0.511\|GO:0032774_0.504\|GO:0019219_0.502	IPR008883+6-149_26-145+\|IPR016135+6-148_14-146+\|IPR017916+343-405_348-414+\|IPR037202+348-408+\|IPR052070+22-409+	—	PF05743+26-145+UEV_domain\|PF09454+343-405+Vps23_core_domain	—	PTHR23306+22-409+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	148-261	2.000	1-147;262-414	7nlc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.814	47070.100	7.303	5.500	23.671	12.077	49.517	50.483	13.285	10.386	51.932

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	grey60	1456.725	1497.428	1407.989	1335.695	1671.971	1627.057	2547.514	1950.532	1611.308	650.370	1062.201

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.318	-0.302	—	0.293	—	0.657	—	0.527	—	—	—	—	—

No JSON data available for plots.

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