Hg_chrom6_TN10mRNA_12312
Organism: Heterodera glycines Gene Locus: chr6:6222231-6223698 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.384 | 1.187 | 0.546 | 0.932 | 0.45 | 0.616 | 1.037 | 2.252 | 1.468 | 1.542 | 0.728 | 0.53 | 2.836 | 1.271 | 1.164 | 0.815 | 0.738 | 0.865 | 1.848 | 0.883 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11601
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.132
|
0.202
|
0.018
|
0.125
|
0.877
|
0.065
|
0.126
|
0.005
|
0.162
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010638
|
1.000
|
1.000
|
Hsc_gene_1762.t1
|
Hsc_gene_1762.t1
|
— |
Q28C88.1 2-acylglycerol O-acyltransferase 1 [Xenopus tropicalis]
|
KAH7724443.1 Protein DGTR-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374
|
GO:0008150_0.870|GO:0003674_0.841|GO:0009987_0.817|GO:0003824_0.691|GO:0016740_0.649|GO:0008152_0.639|GO:0016746_0.630|GO:0005575_0.629|GO:0110165_0.627|GO:0044238_0.626|GO:0044237_0.624|GO:0016747_0.621|GO:0009058_0.620|GO:0008374_0.614|GO:0006629_0.578|GO:0016020_0.573|GO:0008610_0.570|GO:0044255_0.566|GO:0071944_0.539|GO:0016411_0.537|GO:0005886_0.528|GO:0044249_0.523
|
IPR007130+39-332+
|
— |
PF03982+39-332+Diacylglycerol_acyltransferase
|
— |
PTHR12317+10-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
331-333
|
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
38235.600
|
9.963
|
23.500
|
20.721
|
20.120
|
38.438
|
61.562
|
15.015
|
5.706
|
45.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
271.223
|
37.160
|
91.338
|
146.679
|
329.394
|
308.832
|
865.768
|
105.466
|
11.748
|
471.050
|
274.206
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.066
|
1.843
|
0.792
|
1.136
|
— |
1.497
|
-1.657
|
3.180
|
-5.492
|
— | — | — |
6.961
|
No JSON data available for plots.