Hg_chrom6_TN10mRNA_12316
Organism: Heterodera glycines Gene Locus: chr6:6230594-6236024 Feature type: polypeptideProtein Sequence
Length: 856
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.236 | 0.951 | 0.956 | 0.443 | 1.48 | 1.707 | 0.89 | 0.935 | 1.012 | 1.389 | 0.655 | 1.443 | 0.941 | 0.607 | 1.574 | 0.951 | 0.919 | 0.602 | 0.27 | 0.412 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11605
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRTSTMNNPQRRIRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.761
|
0.074
|
0.015
|
0.590
|
0.058
|
0.056
|
0.054
|
0.016
|
0.142
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010641
|
1.000
|
1.000
|
Hsc_gene_1765.t1
|
Hsc_gene_1765.t1
|
— | — |
KAI1714523.1 endoplasmic reticulum-based factor for assembly of v-ATPase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR011990+7-150_59-443_198-397_339-548_398-551+|IPR019734+57-90_106-139_268-301_520-553+
|
SM00028+57-90_106-139_268-301_520-553+
|
PF14559+470-512+Tetratricopeptide_repeat
|
— |
PTHR12558+62-550+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
523-856
|
1.000
|
1-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
94526.280
|
5.547
|
-10.000
|
28.037
|
7.009
|
51.051
|
48.949
|
13.902
|
14.136
|
48.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1277.248
|
1371.819
|
1318.774
|
1387.500
|
1318.993
|
1031.883
|
910.307
|
965.383
|
2395.290
|
677.246
|
1413.551
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.287
|
-0.121
|
0.182
|
-0.105
|
-0.340
|
-0.171
|
-0.201
|
— | — | — | — | — | — |
No JSON data available for plots.