Hg_chrom6_TN10mRNA_12318
Organism: Heterodera glycines Gene Locus: chr6:6240147-6243001 Feature type: polypeptideProtein Sequence
Length: 521
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 1.339 | 0.977 | 0.331 | 1.216 | 1.083 | 0.868 | 1.631 | 1.109 | 1.089 | 0.582 | 1.806 | 1.493 | 1.07 | 1.175 | 0.795 | 0.755 | 0.989 | 1.476 | 0.734 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11607
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-29
|
0.612
|
0.609
|
0.000
|
0.000
|
0.219
|
0.288
|
0.069
|
0.339
|
0.175
|
0.098
|
0.155
|
0.021
|
0.233
|
0.859
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010643
|
1.000
|
1.000
|
Hsc_gene_24091.t1
|
Hsc_gene_1768.t1;Hsc_gene_24091.t1
|
— |
O17754.1 Carboxypeptidase E [Caenorhabditis elegans]
|
AVA09654.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0005575_0.771|GO:0110165_0.761|GO:0003674_0.743|GO:0008150_0.696|GO:0003824_0.554|GO:0016020_0.535
|
IPR000834+49-477_55-360_75-87_101-115_101-123_180-188_241-254+|IPR008969+373-463+|IPR050753+43-452+
|
SM00631+49-477+
|
PF00246+55-360+Zinc_carboxypeptidase|PF13620+374-446+Carboxypeptidase_regulatory-like_domain
|
G3DSA:3.40.630.10:FF:000020+43-372+Carboxypeptidase_D
|
PTHR11532+43-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
516-521
|
1.000
|
1-515
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
58675.320
|
5.703
|
-7.500
|
25.528
|
13.052
|
45.681
|
54.319
|
12.860
|
12.668
|
49.712
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
10342.346
|
3484.064
|
38952.378
|
16408.298
|
4337.942
|
2603.696
|
4577.321
|
21065.244
|
4586.043
|
7522.377
|
6263.948
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.255
|
2.098
|
-1.140
|
-1.952
|
-0.722
|
0.825
|
2.917
|
-2.061
|
— |
2.016
|
— | — | — |