Hg_chrom6_TN10mRNA_12319
Organism: Heterodera glycines Gene Locus: chr6:6243874-6245767 Feature type: polypeptideProtein Sequence
Length: 323
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.008 | 1.008 | 0.619 | 1.068 | 0.929 | 1.032 | 0.811 | 0.929 | 1.376 | 1.046 | 1.126 | 1.821 | 1.376 | 1.25 | 1.39 | 0.885 | 0.914 | 0.797 | 0.714 | 0.455 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11608
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKEPLMEVEQVLEAAKRAK
|
— | — |
10-45
|
0.960
|
— | — |
0.000
|
— | — |
0.460
|
0.468
|
0.153
|
0.643
|
0.109
|
0.082
|
0.103
|
0.130
|
0.049
|
0.184
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004412
|
1.000
|
2.000
|
Hsc_gene_1769.t1;Hsc_gene_24092.t1
|
Hsc_gene_1769.t1;Hsc_gene_24092.t1
|
— |
Q4UM45.1 Biotin synthase [Rickettsia felis URRWXCal2]
|
QCF29850.1 biotin synthase [Heterodera glycines]
|
CAG1012729
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004076|GO:0009102|GO:0051536
|
GO:0008150_0.745|GO:0003674_0.683|GO:0009987_0.675|GO:0008152_0.616|GO:0044237_0.596|GO:0005575_0.590|GO:0009058_0.588|GO:0110165_0.582|GO:0044249_0.568|GO:0044281_0.520
|
IPR002684+10-285_10-321_11-285+|IPR006638+48-262+|IPR007197+43-272_54-213+|IPR010722+227-281_227-320+|IPR013785+10-321+|IPR024177+6-321_9-319+
|
SM00729+48-262+|SM00876+227-320+
|
PF04055+54-213+Radical_SAM_superfamily|PF06968+227-281+Biotin_and_Thiamin_Synthesis_associated_domain
|
— |
PTHR22976+10-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
309-323
|
1.000
|
1-308
|
1r30_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
35902.710
|
10.070
|
20.000
|
25.077
|
9.288
|
45.201
|
54.799
|
16.099
|
8.978
|
49.845
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
423.401
|
52.887
|
158.893
|
283.159
|
883.409
|
425.059
|
716.262
|
204.123
|
164.168
|
707.832
|
474.833
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.356
|
2.284
|
0.943
|
1.609
|
-1.042
|
0.764
|
-1.165
|
1.954
|
— | — | — | — | — |
No JSON data available for plots.