Hg_chrom6_TN10mRNA_12320
Organism: Heterodera glycines Gene Locus: chr6:6245922-6247793 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.675 | 0.9 | 1.173 | 1.001 | 1.344 | 1.323 | 0.538 | 1.129 | 1.147 | 1.7 | 0.733 | 0.759 | 2.061 | 0.496 | 1.251 | 1.014 | 0.582 | 0.88 | 1.737 | 0.664 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11609
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.321
|
0.254
|
0.003
|
0.318
|
0.495
|
0.185
|
0.362
|
0.030
|
0.320
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010644
|
1.000
|
1.000
|
Hsc_gene_24093.t1
|
Hsc_gene_1773.t1;Hsc_gene_24093.t1
|
— |
Q5NVD7.1 ELMO domain-containing protein 1 [Pongo abelii]
|
KAI1712174.1 ELMO/CED-12 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.782|GO:0110165_0.679|GO:0008150_0.668|GO:0003674_0.646|GO:0005488_0.583|GO:0005515_0.568|GO:0016020_0.557|GO:0005622_0.503
|
IPR006816+111-271_126-283+|IPR050868+28-285+
|
— |
PF04727+111-271+ELMO/CED-12_family
|
— |
PTHR12771+28-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-310
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
35992.090
|
5.009
|
-7.500
|
27.742
|
14.194
|
47.419
|
52.581
|
13.226
|
14.516
|
42.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
546.085
|
741.329
|
465.567
|
490.691
|
583.411
|
455.904
|
953.825
|
503.544
|
309.047
|
584.486
|
466.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.901
|
-0.732
|
0.184
|
0.218
|
-0.341
|
1.076
|
— |
1.064
|
— | — | — | — | — |
No JSON data available for plots.