Hg_chrom6_TN10mRNA_12321
Organism: Heterodera glycines Gene Locus: chr6:6247997-6248514 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.142 | 1.246 | 0.649 | 0.616 | 0.595 | 0.687 | 0.425 | 0.893 | 1.786 | 1.327 | 0.676 | 1.05 | 3.472 | 0.687 | 0.547 | 0.51 | 0.732 | 1.894 | 0.0 | 1.313 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11610
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.104
|
0.289
|
0.009
|
0.059
|
0.785
|
0.515
|
0.789
|
0.025
|
0.325
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010645
|
1.000
|
1.000
|
Hsc_gene_24094.t1
|
Hsc_gene_24094.t1
|
— |
Q9VLM5.1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [Drosophila melanogaster]
|
KAI1720884.1 DAD family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008250|GO:0016020
|
GO:0008150_0.815|GO:0005575_0.656|GO:0110165_0.652|GO:0009987_0.587|GO:0016020_0.574|GO:0005622_0.522|GO:0005737_0.522|GO:0071944_0.504
|
IPR003038+2-112_4-112_7-112+
|
— |
PF02109+7-112+DAD_family
|
— |
PTHR10705+4-112+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
9ygy_M2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
12696.000
|
7.129
|
1.000
|
16.071
|
18.750
|
32.143
|
67.857
|
8.929
|
7.143
|
48.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
896.168
|
579.345
|
575.965
|
990.640
|
1317.920
|
1153.035
|
1132.500
|
817.323
|
553.273
|
1043.256
|
833.264
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.238
|
0.637
|
0.891
|
0.380
|
-0.178
|
— |
-0.601
|
0.614
|
— | — | — | — | — |
No JSON data available for plots.