Hg_chrom6_TN10mRNA_12322
Organism: Heterodera glycines Gene Locus: chr6:6248689-6249904 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 0.954 | 0.803 | 0.761 | 2.313 | 1.132 | 0.864 | 1.262 | 0.771 | 1.066 | 1.625 | 2.041 | 0.964 | 0.485 | 1.03 | 0.676 | 0.931 | 0.478 | 0.243 | 0.557 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11611
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.567
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKRKK,AQMKKEKKRAEKANAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.493
|
0.213
|
0.007
|
0.735
|
0.132
|
0.056
|
0.235
|
0.005
|
0.085
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010646
|
1.000
|
1.000
|
Hsc_gene_24095.t1
|
— | — |
Q6GM06.1 Deubiquitinase OTUD6B [Xenopus laevis]
|
KAH7728130.1 OTU-like cysteine protease family protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.680|GO:0005575_0.603|GO:0110165_0.603|GO:0005622_0.564
|
IPR003323+174-315_181-309+|IPR038765+147-315+|IPR049772+165-313+|IPR050704+72-315+
|
— |
PF02338+181-309+OTU-like_cysteine_protease
|
— |
PTHR12419+72-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-171;317-317
|
1.000
|
172-316
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
35761.330
|
5.736
|
-4.000
|
36.593
|
8.202
|
55.521
|
44.479
|
18.297
|
18.297
|
42.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
paleturquoise
|
1795.642
|
2923.682
|
1675.830
|
1507.243
|
1507.190
|
1435.815
|
1568.678
|
1136.432
|
2591.400
|
1504.308
|
1970.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.032
|
-1.093
|
— | — | — | — |
-0.443
|
0.609
|
— | — | — | — | — |
No JSON data available for plots.