Hg_chrom6_TN10mRNA_12324
Organism: Heterodera glycines Gene Locus: chr6:6254729-6255502 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.864 | 0.943 | 0.983 | 0.233 | 1.126 | 0.347 | 1.126 | 1.351 | 1.351 | 0.73 | 1.536 | 1.987 | 1.126 | 0.91 | 1.517 | 0.386 | 0.886 | 1.024 | 0.52 | 1.59 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11613
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.789
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.828
|
0.136
|
0.025
|
0.359
|
0.138
|
0.096
|
0.063
|
0.007
|
0.069
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010648
|
1.000
|
1.000
|
Hsc_gene_24097.t1
|
Hsc_gene_24097.t1
|
— |
Q8ITY4.2 Splicing factor 3B subunit 6-like protein [Caenorhabditis elegans]
|
KAH7728131.1 Protein C50D2.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.867|GO:0110165_0.865|GO:0005622_0.811|GO:0016020_0.751|GO:0043226_0.747|GO:0043229_0.743|GO:0043227_0.703|GO:0008150_0.691|GO:0043231_0.691|GO:0009987_0.586|GO:0003674_0.575|GO:0005634_0.572|GO:0008152_0.535|GO:0044237_0.514|GO:0044238_0.512|GO:0009058_0.505
|
IPR000504+19-94_20-90_21-87+|IPR012677+14-93+|IPR034150+17-93+|IPR035979+18-98+|IPR050374+20-111+
|
SM00360+20-90+
|
PF00076+21-87+RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000106+14-93+Splicing_factor_3b,_subunit_6
|
PTHR23003+20-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;124-148
|
1.000
|
2-123
|
8y7e_5
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
16826.380
|
10.045
|
10.000
|
32.432
|
12.838
|
45.946
|
54.054
|
20.270
|
12.162
|
46.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1171.824
|
954.712
|
1060.300
|
1329.616
|
1420.279
|
1264.158
|
1051.544
|
1438.144
|
939.684
|
1227.436
|
1104.113
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.341
|
0.435
|
— |
-0.153
|
-0.256
|
— |
-0.310
|
— | — | — | — | — |
No JSON data available for plots.