Hg_chrom6_TN10mRNA_12325
Organism: Heterodera glycines Gene Locus: chr6:6255589-6258462 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.957 | 0.984 | 0.346 | 0.768 | 2.312 | 0.787 | 1.603 | 0.935 | 1.192 | 0.334 | 1.179 | 0.779 | 1.349 | 1.227 | 1.088 | 0.821 | 0.668 | 0.308 | 1.061 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11614
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.238
|
0.130
|
0.016
|
0.629
|
0.121
|
0.283
|
0.286
|
0.018
|
0.516
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002334
|
2.000
|
2.000
|
Hsc_gene_24098.t1;Hsc_gene_24098.t2
|
Hsc_gene_24098.t1;Hsc_gene_24098.t2
|
— |
P62484.1 Abl interactor 2 [Mus musculus]
|
KAI1706899.1 abl-interactor HHR domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.912|GO:0005575_0.894|GO:0110165_0.893|GO:0009987_0.846|GO:0005622_0.741|GO:0065007_0.735|GO:0050789_0.728|GO:0050794_0.711|GO:0016020_0.674|GO:0043226_0.628|GO:0003674_0.544|GO:0043229_0.541|GO:0071944_0.535|GO:0005737_0.529|GO:0005488_0.502
|
IPR001452+441-499_444-454_444-499_448-495_458-473_486-498+|IPR012849+108-171+|IPR028457+35-472+|IPR036028+435-498+
|
SM00326+444-499+
|
PF07815+108-171+Abl-interactor_HHR|PF14604+448-495+Variant_SH3_domain
|
G3DSA:2.30.30.40:FF:000002+429-499+abl_interactor_1_isoform_X1
|
PTHR10460+35-472+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
176-436;499-499
|
2.000
|
1-175;437-498
|
4n78_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
55496.460
|
6.400
|
-1.000
|
21.443
|
10.020
|
51.503
|
48.497
|
11.423
|
10.020
|
53.106
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1023.031
|
943.725
|
1040.925
|
891.210
|
997.710
|
907.994
|
1360.780
|
1134.654
|
682.452
|
1235.049
|
998.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.220
|
-0.115
|
0.131
|
— |
0.594
|
0.217
|
0.405
|
— | — | — | — | — |
No JSON data available for plots.