SCN Proteipedia

Hg_chrom6_TN10mRNA_12329

Organism: Heterodera glycines Gene Locus: chr6:6267822-6273455 Feature type: polypeptide

Protein Sequence

Length: 740

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.99	0.849	0.958	0.606	1.261	1.49	0.74	1.486	0.601	1.114	0.676	1.113	1.051	1.273	1.655	1.583	0.975	0.532	0.416	0.397	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11617	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKPR,RRTLQAIFKETKRPSR,RRKAKEKAATKLLGLGAERQTAKRREKMREKRRERSGKGTWGAAGTRHRARRGRGR	50-74	0.991	—	—	—	—	0.000	—	—	0.813	0.090	0.041	0.430	0.047	0.022	0.092	0.029	0.106	0.124

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010650	1.000	1.000	Hsc_gene_24102.t1	—	—	P70512.1 Hepatocyte nuclear factor 6 [Rattus norvegicus]	KHN73042.1 Hepatocyte nuclear factor 6 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0003674_0.848\|GO:0005488_0.848\|GO:0008150_0.839\|GO:0005575_0.827\|GO:0110165_0.820\|GO:0009987_0.810\|GO:0065007_0.787\|GO:0005622_0.779\|GO:0050789_0.778\|GO:0050794_0.771\|GO:0097159_0.757\|GO:0003676_0.750\|GO:0043226_0.740\|GO:0008152_0.708\|GO:0019222_0.708\|GO:0031323_0.708\|GO:0044237_0.708\|GO:0003677_0.700\|GO:0044238_0.694\|GO:0080090_0.694\|GO:0043170_0.691\|GO:0060255_0.691\|GO:0043565_0.690\|GO:0003690_0.688\|GO:1990837_0.685\|GO:0009058_0.684\|GO:0009059_0.684\|GO:0009889_0.684\|GO:0010556_0.684\|GO:0031326_0.684\|GO:0044249_0.684\|GO:0010467_0.680\|GO:0043229_0.680\|GO:0006139_0.677\|GO:0034654_0.677\|GO:0016070_0.675\|GO:0090304_0.675\|GO:0141187_0.672\|GO:0010468_0.671\|GO:0032774_0.671\|GO:0019219_0.662\|GO:0051252_0.662\|GO:0016020_0.658\|GO:0006351_0.653\|GO:0006355_0.648\|GO:2001141_0.648\|GO:0006357_0.617\|GO:0006366_0.617\|GO:0048518_0.588\|GO:0043227_0.575\|GO:0048522_0.570\|GO:0009893_0.521\|GO:0010604_0.512\|GO:0043231_0.510\|GO:0009891_0.508\|GO:0031325_0.508\|GO:0000976_0.507\|GO:0001067_0.507\|GO:0031328_0.505	IPR001356+564-624_566-628_567-620+\|IPR003350+447-533_448-533_454-529+\|IPR009057+566-623+\|IPR010982+447-537_454-529+\|IPR051649+54-665+	SM00389+566-628+\|SM01109+448-533+	PF00046+567-620+Homeodomain\|PF02376+454-529+CUT_domain	G3DSA:1.10.260.40:FF:000005+455-531+One_cut_domain_family_member	PTHR14057+54-665+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-265;380-445;520-740	2.000	266-379;446-519	2d5v_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	81813.990	7.285	9.000	28.378	8.649	54.865	45.135	15.541	12.838	52.568

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	436.832	1014.641	1771.257	433.306	127.775	142.654	152.612	816.550	199.301	89.617	136.625

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.574	-1.365	-1.923	-1.792	—	—	2.419	-2.279	—	—	—	—	—

No JSON data available for plots.

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