Hg_chrom6_TN10mRNA_12330
Organism: Heterodera glycines Gene Locus: chr6:6273518-6278098 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.496 | 0.418 | 0.654 | 1.085 | 0.524 | 0.807 | 0.722 | 2.584 | 1.099 | 1.427 | 0.885 | 1.19 | 1.998 | 1.599 | 0.917 | 1.316 | 0.626 | 0.885 | 2.766 | 1.124 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11618
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RKIMEKYPGAYKRKSN
|
27-47
|
1.000
|
1-61
|
1.000
|
— | — |
0.000
|
— | — |
0.183
|
0.231
|
0.259
|
0.219
|
0.759
|
0.146
|
0.242
|
0.009
|
0.150
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010651
|
1.000
|
1.000
|
Hsc_gene_24103.t1
|
Hsc_gene_24103.t1
|
— |
G5EGA5.1 Delta(12) fatty acid desaturase fat-2 [Caenorhabditis elegans]
|
KAF7624759.1 FA_desaturase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016491
|
GO:0008150_0.879|GO:0009987_0.827|GO:0003674_0.762|GO:0008152_0.711|GO:0044238_0.696|GO:0044237_0.682|GO:0009058_0.642|GO:0003824_0.627|GO:0044281_0.622|GO:0006629_0.620|GO:0044249_0.619|GO:0044255_0.609|GO:0006082_0.601|GO:0019752_0.601|GO:0043436_0.601|GO:0006631_0.600|GO:0032787_0.600|GO:0008610_0.577|GO:0044283_0.566|GO:0006633_0.563|GO:0016053_0.563|GO:0046394_0.563|GO:0072330_0.563|GO:0005575_0.547|GO:0110165_0.547|GO:0016491_0.521
|
IPR005804+145-400+|IPR012171+104-432+
|
— |
PF00487+145-400+Fatty_acid_desaturase
|
— |
PTHR32100+104-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
436-445
|
1.000
|
1-435
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.892
|
51230.620
|
9.284
|
27.500
|
22.247
|
19.775
|
40.225
|
59.775
|
15.506
|
6.742
|
46.067
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
9270.524
|
42178.437
|
5542.177
|
5954.432
|
8034.261
|
6151.312
|
9725.060
|
11407.108
|
3399.826
|
4636.379
|
4106.427
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.159
|
-2.962
|
0.213
|
0.400
|
-0.371
|
0.672
|
0.790
|
— | — | — | — | — | — |
No JSON data available for plots.