Hg_chrom6_TN10mRNA_12331
Organism: Heterodera glycines Gene Locus: chr6:6278531-6281364 Feature type: polypeptideProtein Sequence
Length: 525
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.709 | 0.886 | 0.658 | 1.576 | 1.429 | 1.856 | 0.408 | 0.762 | 0.635 | 1.21 | 0.837 | 1.12 | 1.746 | 1.648 | 1.322 | 1.361 | 0.625 | 0.779 | 1.026 | 0.224 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11619
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRSVILQNKICSKKSLR
|
19-40
|
0.998
|
95-117
|
0.999
|
— | — |
0.000
|
— | — |
0.102
|
0.109
|
0.114
|
0.250
|
0.319
|
0.122
|
0.393
|
0.035
|
0.306
|
0.812
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010652
|
1.000
|
1.000
|
Hsc_gene_24104.t1
|
Hsc_gene_24104.t1
|
— | — |
KAI1732811.1 Chitin binding Peritrophin-A domain containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008061
|
— |
IPR036508+432-494+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
244-301;523-525
|
2.000
|
1-243;302-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
59630.960
|
7.002
|
3.000
|
25.714
|
9.905
|
50.095
|
49.905
|
13.524
|
12.190
|
48.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
987.300
|
192.523
|
390.122
|
99.314
|
85.245
|
121.120
|
213.178
|
387.005
|
429.358
|
3439.229
|
2149.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
-1.092
|
-1.864
|
— |
0.519
|
0.826
|
1.584
|
-0.723
|
-3.085
|
— |
-5.136
|
— | — |
No JSON data available for plots.