Hg_chrom6_TN10mRNA_12333
Organism: Heterodera glycines Gene Locus: chr6:6282678-6302771 Feature type: polypeptideProtein Sequence
Length: 3,888
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.065 | 0.865 | 2.146 | 1.097 | 1.392 | 0.992 | 1.093 | 0.806 | 0.987 | 0.511 | 0.772 | 1.329 | 1.39 | 1.181 | 1.15 | 0.793 | 0.904 | 0.989 | 0.56 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11621
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.758
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-33
|
— |
0.856
|
— |
1.000
|
0.168
|
0.064
|
0.014
|
0.264
|
0.128
|
0.302
|
0.278
|
0.025
|
0.761
|
0.216
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002335
|
2.000
|
2.000
|
Hsc_gene_1772.t1;Hsc_gene_24108.t1
|
Hsc_gene_1772.t1;Hsc_gene_24106.t1;Hsc_gene_24108.t1
|
— |
Q62381.1 Tolloid-like protein 1 [Mus musculus]
|
XP_042930343.1 GCC2 and GCC3 family protein [Brugia malayi];VIO87731.1 GCC2 and GCC3 family protein [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005515
|
GO:0008150_0.840|GO:0005575_0.754|GO:0110165_0.726|GO:0003674_0.712|GO:0009987_0.677|GO:0032501_0.593|GO:0032502_0.568|GO:0048856_0.568|GO:0071944_0.518|GO:0050896_0.515|GO:0065007_0.514
|
IPR000152+938-949_2392-2403_2468-2479_2506-2517_2547-2558_2585-2596_2752-2763+|IPR000421+1447-1593_1448-1593_1452-1592_1476-1583+|IPR000436+656-720_658-718_721-781_723-779_723-780_782-842_784-840_784-841_861-918_882-918_1220-1259_1220-1267_1331-1398_1333-1396_1333-1397_1401-1448_3146-3216_3148-3214+|IPR000742+920-960_923-960_947-959_1155-1216_2220-2256_2223-2256_2244-2255_2258-2294_2261-2294_2262-2292_2282-2293_2296-2335_2299-2335_2323-2334_2337-2375_2340-2375_2341-2372_2363-2374_2377-2413_2380-2413_2381-2411_2401-2412_2415-2451_2418-2451_2419-2448_2439-2450_2453-2489_2456-2489_2457-2485_2477-2488_2491-2527_2494-2527_2495-2523_2515-2526_2529-2568_2532-2568_2556-2567_2570-2606_2573-2606_2574-2604_2594-2605_2608-2645_2611-2645_2612-2643_2633-2644_2647-2683_2650-2683_2671-2682_2685-2735_2688-2735_2723-2734_2737-2773_2740-2773_2761-2772_3544-3581_3605-3647_3647-3682_3649-3682_3670-3681+|IPR000859+296-405_296-409_303-408_413-520_413-523_524-657+|IPR001304+108-250_115-250_126-251+|IPR001881+920-960_1152-1194_2242-2294_2298-2335_2339-2375_2377-2413_2415-2451_2453-2489_2492-2527_2529-2568_2570-2606_2612-2645_2685-2735_2737-2773_3602-3647+|IPR002172+253-288_253-289_253-290_254-288+|IPR003410+1619-1705_1620-1701_1704-1786_1706-1789_3059-3145+|IPR008979+1448-1594+|IPR009030+2030-2204_2364-2496_2535-2651_2719-3421_3393-3586+|IPR011641+2069-2108_2115-2165_2172-2219_3391-3438_3454-3492_3505-3545_3553-3600+|IPR013032+2229-2250_2546-2562+|IPR013320+2795-2981+|IPR016186+59-255+|IPR016187+103-254+|IPR018097+920-947_2377-2401_2453-2477_2737-2761+|IPR023415+266-288+|IPR035914+292-410_295-409_411-522_412-521_523-656_523-657+|IPR035976+657-732_721-785_783-854_1332-1403+|IPR036055+248-289_256-285+|IPR049883+920-955_1152-1184+
|
SM00032+658-718_723-779_784-840_861-918_1220-1267_1333-1396_1401-1448_3148-3214+|SM00034+108-250+|SM00042+296-409_413-523_524-657+|SM00179+920-960_1152-1194_2242-2294_2298-2335_2339-2375_2377-2413_2415-2451_2453-2489_2492-2527_2529-2568_2570-2606_2612-2645_2685-2735_2737-2773_3602-3647+|SM00181+923-960_1155-1216_2223-2256_2261-2294_2299-2335_2340-2375_2380-2413_2418-2451_2456-2489_2494-2527_2532-2568_2573-2606_2611-2645_2650-2683_2688-2735_2740-2773_3544-3581_3605-3647_3649-3682+|SM00192+253-290+|SM00231+1447-1593+|SM01411+2063-2108_2115-2165_2172-2219_3390-3438_3445-3492_3499-3545_3553-3600+
|
PF00008+2262-2292_2341-2372_2381-2411_2419-2448_2457-2485_2495-2523_2574-2604_2612-2643+EGF-like_domain|PF00057+253-288+Low-density_lipoprotein_receptor_domain_class_A|PF00059+126-251+Lectin_C-type_domain|PF00084+723-779_784-840_882-918_1333-1396+Sushi_repeat_(SCR_repeat)|PF00431+296-405_413-520+CUB_domain|PF00754+1476-1583+F5/8_type_C_domain|PF02494+1620-1701_1704-1786+HYR_domain|PF07645+920-955_1152-1184+Calcium-binding_EGF_domain|PF07699+2069-2108_2115-2165_2172-2219_3391-3438_3454-3492_3505-3545_3553-3600+Tyrosine-protein_kinase_ephrin_type_A/B_receptor-like|PF12661+2229-2250_2546-2562+Human_growth_factor-like_EGF
|
G3DSA:2.10.25.10:FF:000038+915-959+Fibrillin_2|G3DSA:2.10.25.10:FF:000066+2259-2296_2493-2529+FAT_atypical_cadherin_4|G3DSA:2.10.25.10:FF:000117+2378-2416+Delta-like_protein|G3DSA:2.10.25.10:FF:000122+2738-2775+Protein_crumbs_homolog_2|G3DSA:2.10.25.10:FF:000146+2531-2570+Putative_neurogenic_locus_notch|G3DSA:2.10.25.10:FF:000173+2339-2377+Neurogenic_locus_notch_protein_2|G3DSA:2.10.25.10:FF:000247+2571-2608+Delta/notch_like_EGF_repeat_containing|G3DSA:2.10.25.10:FF:000472+2417-2492+Uncharacterized_protein,_isoform_A|G3DSA:2.10.50.10:FF:000018+2065-2121+Sushi,_von_Willebrand_factor_type_A,_EGF_and_pentraxin_domain-containing_1|G3DSA:2.60.120.290:FF:000005+411-521+Procollagen_C-endopeptidase_enhancer_1
|
PTHR12916+409-2109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
3277-3349;3778-3888
|
2.000
|
1-3276;3350-3777
|
9b3n_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
426680.090
|
5.636
|
-42.500
|
22.685
|
10.159
|
45.576
|
54.424
|
11.343
|
11.343
|
56.430
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
801.887
|
795.361
|
483.074
|
327.786
|
759.477
|
1177.226
|
927.691
|
303.955
|
88.533
|
1651.392
|
981.596
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.951
|
-1.416
|
-0.449
|
1.180
|
0.649
|
-0.335
|
-2.068
|
1.755
|
-4.365
|
— | — | — | — |