Hg_chrom6_TN10mRNA_12336
Organism: Heterodera glycines Gene Locus: chr6:6304057-6305593 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 0.552 | 0.862 | 0.273 | 0.988 | 1.318 | 1.223 | 1.186 | 1.405 | 1.496 | 1.018 | 1.86 | 1.647 | 0.608 | 0.968 | 1.016 | 0.583 | 1.078 | 0.608 | 1.279 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11623
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.453
|
0.061
|
0.621
|
0.710
|
0.324
|
0.632
|
0.123
|
0.321
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010655
|
1.000
|
1.000
|
Hsc_gene_24109.t1
|
Hsc_gene_24109.t1
|
— |
Q9VIU7.1 Dolichol-phosphate mannosyltransferase subunit 1 [Drosophila melanogaster]
|
KAF7635209.1 Dolichol-phosphate mannosyltransferase subunit 1 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004582
|
GO:0008150_0.799|GO:0005575_0.753|GO:0110165_0.747|GO:0016020_0.686|GO:0003674_0.640|GO:0009987_0.615|GO:0005622_0.600|GO:0005737_0.592|GO:0071944_0.584|GO:0005886_0.569|GO:0008152_0.540|GO:0003824_0.531|GO:0043226_0.531|GO:0043229_0.524|GO:0044238_0.515|GO:0043227_0.507|GO:0044237_0.507
|
IPR001173+22-190+|IPR029044+3-242_18-243+|IPR039528+10-250_23-248+
|
— |
PF00535+22-190+Glycosyl_transferase_family_2
|
G3DSA:3.90.550.10:FF:000036+13-247+Dolichol-phosphate_mannosyltransferase_subunit_1
|
PTHR43398+10-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-253
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
28475.920
|
8.409
|
5.000
|
24.506
|
13.439
|
42.688
|
57.312
|
13.834
|
10.672
|
43.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
1849.042
|
1291.087
|
1216.012
|
1344.526
|
1497.056
|
1166.101
|
1365.894
|
1169.974
|
3055.925
|
2403.621
|
2683.180
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.316
|
— |
0.254
|
0.122
|
-0.346
|
0.240
|
— |
0.367
|
— | — | — | — | — |
No JSON data available for plots.