Hg_chrom6_TN10mRNA_12337
Organism: Heterodera glycines Gene Locus: chr6:6306384-6307777 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.71 | 1.421 | 1.228 | 1.22 | 1.34 | 0.907 | 0.268 | 0.804 | 1.429 | 1.695 | 0.974 | 0.567 | 1.34 | 0.371 | 1.247 | 1.194 | 0.685 | 1.121 | 0.742 | 0.567 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11624
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.242
|
0.050
|
0.005
|
0.486
|
0.255
|
0.531
|
0.686
|
0.011
|
0.119
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010656
|
1.000
|
1.000
|
Hsc_gene_24110.t2
|
Hsc_gene_24110.t1;Hsc_gene_24110.t2
|
— |
Q21444.1 Conserved oligomeric Golgi complex subunit 2 [Caenorhabditis elegans]
|
KAI1733100.1 conserved oligomeric golgi complex component, COG2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007030|GO:0015031|GO:0016020
|
GO:0008150_0.937|GO:0005575_0.707|GO:0110165_0.705|GO:0005622_0.656|GO:0009987_0.633|GO:0016020_0.619|GO:0005737_0.598|GO:0043226_0.592|GO:0043229_0.576|GO:0043227_0.559|GO:0043231_0.531|GO:0065007_0.524|GO:0050789_0.515
|
IPR009316+6-115+|IPR024602+12-85+
|
— |
PF06148+12-85+COG2_N-terminal
|
— |
PTHR12961+6-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
35597.790
|
5.299
|
-4.500
|
28.939
|
9.325
|
51.125
|
48.875
|
14.148
|
14.791
|
46.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
paleturquoise
|
801.868
|
835.499
|
612.840
|
624.017
|
878.999
|
1141.855
|
1103.720
|
861.800
|
890.901
|
567.975
|
706.372
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.677
|
-0.558
|
0.135
|
0.462
|
0.392
|
— |
-0.511
|
0.499
|
— | — | — | — | — |
No JSON data available for plots.