Hg_chrom6_TN10mRNA_12339
Organism: Heterodera glycines Gene Locus: chr6:6307880-6309585 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.396 | 1.387 | 1.188 | 0.686 | 1.42 | 1.02 | 0.507 | 0.994 | 2.462 | 1.037 | 1.334 | 2.005 | 1.42 | 0.219 | 0.928 | 0.812 | 0.885 | 0.861 | 0.656 | 1.17 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11625
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKVNFRVFDVGGQRSERKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.153
|
0.187
|
0.010
|
0.633
|
0.067
|
0.221
|
0.247
|
0.001
|
0.513
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001769
|
2.000
|
2.000
|
Hsc_gene_24111.t1;Hsc_gene_26095.t1
|
Hsc_gene_24111.t1
|
— |
Q60W52.1 Guanine nucleotide-binding protein alpha-3 subunit [Caenorhabditis briggsae]
|
KAH7726207.1 GPA-3 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0007165|GO:0007186|GO:0019001|GO:0031683
|
GO:0005575_0.906|GO:0110165_0.893|GO:0008150_0.820|GO:0016020_0.811|GO:0071944_0.758|GO:0005886_0.737|GO:0009987_0.685|GO:0005622_0.652|GO:0050896_0.615|GO:0003674_0.596|GO:0043226_0.568|GO:0065007_0.548|GO:0005737_0.545|GO:0050789_0.522|GO:0043227_0.513|GO:0050794_0.504|GO:0051716_0.502
|
IPR001019+8-351_9-351_10-339_27-352_29-346_30-45_166-188_195-212_217-245_263-272+|IPR011025+56-180_57-179+|IPR027417+25-347_30-340+
|
SM00275+8-351+
|
PF00503+10-339+G-protein_alpha_subunit
|
G3DSA:3.40.50.300:FF:000563+180-341+Guanine_nucleotide-binding_protein_alpha_subunit
|
PTHR10218+9-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6
|
1.000
|
7-352
|
9plo_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
41160.400
|
5.959
|
-2.500
|
30.398
|
11.932
|
51.420
|
48.580
|
15.341
|
15.057
|
40.057
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.