Hg_chrom6_TN10mRNA_12340
Organism: Heterodera glycines Gene Locus: chr6:6310319-6312032 Feature type: polypeptideProtein Sequence
Length: 388
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 1.079 | 0.984 | 0.711 | 1.031 | 1.586 | 0.46 | 0.644 | 1.203 | 1.358 | 0.976 | 0.606 | 1.933 | 0.991 | 0.999 | 1.399 | 0.761 | 0.703 | 0.991 | 0.379 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11624
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.362
|
0.181
|
0.008
|
0.711
|
0.120
|
0.185
|
0.554
|
0.013
|
0.072
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004413
|
2.000
|
1.000
|
Hsc_gene_24110.t1
|
Hsc_gene_24110.t1
|
— |
Q21444.1 Conserved oligomeric Golgi complex subunit 2 [Caenorhabditis elegans]
|
KAI1733100.1 conserved oligomeric golgi complex component, COG2 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007030|GO:0015031|GO:0016020
|
GO:0008150_0.937|GO:0009987_0.887|GO:0065007_0.624|GO:0050789_0.605|GO:0050794_0.593|GO:0005575_0.556|GO:0110165_0.553|GO:0032501_0.545|GO:0032502_0.537|GO:0048856_0.537|GO:0007275_0.515|GO:0048731_0.508
|
IPR009316+4-377+|IPR024603+7-350+
|
— |
PF12022+7-350+COG_complex_component,_COG2,_C-terminal
|
— |
PTHR12961+4-377+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
377-388
|
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
43508.470
|
6.924
|
1.500
|
24.227
|
10.825
|
49.485
|
50.515
|
12.629
|
11.598
|
48.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
paleturquoise
|
801.868
|
835.499
|
612.840
|
624.017
|
878.999
|
1141.855
|
1103.720
|
861.800
|
890.901
|
567.975
|
706.372
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.677
|
-0.558
|
0.135
|
0.462
|
0.392
|
— |
-0.511
|
0.499
|
— | — | — | — | — |
No JSON data available for plots.