Hg_chrom6_TN10mRNA_12341
Organism: Heterodera glycines Gene Locus: chr6:6312323-6317373 Feature type: polypeptideProtein Sequence
Length: 822
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.82 | 0.885 | 0.713 | 1.764 | 1.279 | 0.521 | 1.095 | 0.973 | 1.677 | 0.977 | 1.145 | 1.419 | 0.749 | 1.341 | 0.956 | 0.878 | 0.756 | 0.561 | 0.286 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11626
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRS,RKRR,RKAHLDTLLGAKKTEK,GSKKGKSAGAKRGGGTAAGKRRGG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.385
|
0.098
|
0.011
|
0.738
|
0.143
|
0.080
|
0.318
|
0.026
|
0.094
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010657
|
1.000
|
1.000
|
Hsc_gene_24112.t1
|
Hsc_gene_24112.t1;Hsc_gene_24113.t1
|
— |
Q17750.1 E3 UFM1-protein ligase 1 homolog [Caenorhabditis elegans]
|
KAI1733101.1 e3 UFM1-protein ligase 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0061666|GO:0071569
|
GO:0008150_0.956|GO:0005575_0.827|GO:0110165_0.827|GO:0009987_0.789|GO:0005622_0.764|GO:0016020_0.763|GO:0065007_0.749|GO:0050789_0.729|GO:0050794_0.706|GO:0005737_0.664|GO:0008152_0.612|GO:0043226_0.603|GO:0005886_0.602|GO:0071944_0.602|GO:0043229_0.587|GO:0003674_0.585|GO:0043227_0.547|GO:0050896_0.537|GO:0051716_0.527|GO:0043231_0.509
|
IPR018611+3-804_7-297+
|
— |
PF09743+7-297+E3_UFM1-protein_ligase_1
|
— |
PTHR31057+3-804+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
419-515;771-822
|
2.000
|
1-418;516-770
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
93269.500
|
5.552
|
-11.000
|
30.657
|
9.002
|
51.217
|
48.783
|
15.207
|
15.450
|
43.674
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
2416.587
|
3125.345
|
2894.551
|
1850.907
|
1857.751
|
2163.756
|
2374.322
|
1472.756
|
4662.197
|
1173.649
|
2668.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.340
|
-0.893
|
-0.537
|
— |
0.234
|
0.144
|
-0.659
|
0.831
|
1.870
|
— | — | — | — |
No JSON data available for plots.