Hg_chrom6_TN10mRNA_12342
Organism: Heterodera glycines Gene Locus: chr6:6319223-6320585 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.434 | 1.395 | 0.788 | 0.575 | 0.667 | 1.111 | 0.556 | 1.833 | 1.111 | 1.441 | 0.808 | 1.765 | 1.389 | 0.577 | 1.633 | 0.524 | 1.093 | 1.061 | 0.769 | 0.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11627
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.634
|
0.121
|
0.570
|
0.215
|
0.243
|
0.430
|
0.012
|
0.231
|
0.353
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004414
|
2.000
|
1.000
|
Hsc_gene_24115.t1
|
Hsc_gene_24114.t1;Hsc_gene_24115.t1
|
— |
Q803A8.1 WW domain-containing oxidoreductase [Danio rerio]
|
KAH7721890.1 Retinol dehydrogenase 12 [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.812|GO:0110165_0.808|GO:0008150_0.769|GO:0003674_0.625|GO:0016020_0.614|GO:0005622_0.586|GO:0009987_0.560|GO:0065007_0.522|GO:0005737_0.521|GO:0043226_0.512
|
IPR002347+13-149_14-31_90-101_198-215+|IPR036291+11-251+
|
— |
PF00106+13-149+short_chain_dehydrogenase
|
— |
PTHR24320+8-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-10;298-300
|
1.000
|
11-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
33562.960
|
10.698
|
20.500
|
25.333
|
10.333
|
46.000
|
54.000
|
17.000
|
8.333
|
49.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
130.607
|
8.602
|
20.881
|
25.176
|
312.142
|
878.970
|
62.967
|
92.459
|
0.514
|
45.571
|
26.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.053
|
1.414
|
— |
3.600
|
1.510
|
-3.794
|
-3.376
|
— |
-5.826
|
5.027
|
— | — | — |
No JSON data available for plots.