Hg_chrom6_TN10mRNA_12346
Organism: Heterodera glycines Gene Locus: chr6:6329558-6332080 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 0.563 | 0.44 | 0.765 | 0.706 | 1.086 | 1.656 | 1.008 | 0.672 | 0.954 | 0.519 | 0.83 | 1.064 | 2.753 | 1.276 | 1.181 | 0.628 | 0.764 | 0.465 | 0.534 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11631
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KGPRGNIGKQGQAGKAGEHNRPGPPGPPGPRGEP
|
17-51
|
0.996
|
49-71
|
0.999
|
— | — |
0.001
|
— | — |
0.055
|
0.105
|
0.008
|
0.140
|
0.487
|
0.202
|
0.320
|
0.019
|
0.670
|
0.186
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002861
|
2.000
|
1.000
|
Hsc_gene_24117.t1
|
Hsc_gene_24117.t1
|
— |
P18831.2 Cuticle collagen 6 [Caenorhabditis elegans]
|
KAH7706975.1 DPY-9 protein [Aphelenchus avenae]
|
No
|
-0.620
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+84-131+|IPR008160+227-285+|IPR050632+87-361+
|
— |
PF01391+227-285+Collagen_triple_helix_repeat_(20_copies)|PF01484+84-131+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+87-361+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
174-496
|
1.000
|
1-173
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.956
|
51310.270
|
9.676
|
20.000
|
18.347
|
8.266
|
37.097
|
62.903
|
11.694
|
6.653
|
62.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
943.265
|
445.092
|
680.782
|
567.946
|
1585.577
|
2056.326
|
387.044
|
670.547
|
124.274
|
1636.084
|
988.166
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.383
|
0.214
|
-0.152
|
1.448
|
0.391
|
-2.402
|
-1.726
|
-0.651
|
-3.833
|
— | — | — | — |
No JSON data available for plots.