Hg_chrom6_TN10mRNA_12347
Organism: Heterodera glycines Gene Locus: chr6:6334082-6337605 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.284 | 1.397 | 0.247 | 0.601 | 0.711 | 0.696 | 0.969 | 0.969 | 1.335 | 1.126 | 0.47 | 2.052 | 1.992 | 0.932 | 0.791 | 0.775 | 1.112 | 1.263 | 1.342 | 1.083 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11632
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.596
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
14-34
|
0.977
|
— | — | — | — |
0.000
|
— | — |
0.065
|
0.058
|
0.015
|
0.117
|
0.288
|
0.282
|
0.304
|
0.043
|
0.775
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010659
|
1.000
|
1.000
|
Hsc_gene_24118.t1
|
Hsc_gene_24118.t1
|
— |
Q28722.1 Sodium-dependent phosphate transport protein 1 [Oryctolagus cuniculus]
|
KAI1715204.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.946|GO:0009987_0.856|GO:0005575_0.819|GO:0110165_0.812|GO:0003674_0.802|GO:0006810_0.742|GO:0051179_0.742|GO:0051234_0.742|GO:0055085_0.742|GO:0071944_0.738|GO:0005886_0.716|GO:0016020_0.716|GO:0005215_0.698|GO:0022857_0.698|GO:0015711_0.536
|
IPR011701+71-384+|IPR020846+22-457+|IPR036259+11-458_15-237_261-459+
|
— |
PF07690+71-384+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000003+259-459+Solute_carrier_family_17_member_3
|
PTHR45757+15-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
476-516
|
1.000
|
1-475
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
56541.640
|
8.664
|
12.000
|
14.535
|
14.535
|
35.465
|
64.535
|
8.915
|
5.620
|
53.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1235.287
|
1006.334
|
847.171
|
1534.135
|
1771.040
|
2069.263
|
988.350
|
2529.259
|
21.815
|
1358.440
|
785.601
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.477
|
0.471
|
0.965
|
0.175
|
0.240
|
-1.058
|
— | — | — |
6.339
|
— | — | — |
No JSON data available for plots.