Hg_chrom6_TN10mRNA_12349
Organism: Heterodera glycines Gene Locus: chr6:6344683-6346111 Feature type: polypeptideProtein Sequence
Length: 268
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 0.955 | 0.746 | 2.573 | 1.306 | 0.957 | 0.666 | 1.493 | 0.249 | 1.664 | 0.509 | 0.878 | 1.14 | 1.435 | 1.142 | 0.906 | 1.04 | 0.961 | 0.574 | 0.329 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11634
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-27
|
0.983
|
1.000
|
1.000
|
1.000
|
0.087
|
0.088
|
0.005
|
0.143
|
0.149
|
0.206
|
0.154
|
0.039
|
0.828
|
0.453
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010661
|
1.000
|
1.000
|
Hsc_gene_24120.t1
|
Hsc_gene_24120.t1
|
— |
Q09553.2 Growth arrest-specific protein 1 homolog [Caenorhabditis elegans]
|
KAI1712508.1 growth arrest-specific protein 1 like protein [Ditylenchus destructor]
|
No
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.958|GO:0065007_0.933|GO:0005575_0.926|GO:0110165_0.926|GO:0050789_0.918|GO:0009987_0.908|GO:0050794_0.904|GO:0071944_0.860|GO:0005886_0.856|GO:0016020_0.856|GO:0048519_0.792|GO:0048523_0.762|GO:0007049_0.679|GO:0051726_0.679|GO:0022402_0.677|GO:0010564_0.675|GO:0010948_0.670|GO:0044770_0.670|GO:0044843_0.670|GO:0045786_0.670|GO:1901987_0.670|GO:1901988_0.670|GO:1902806_0.670|GO:1902807_0.670
|
IPR016017+36-109_113-187_113-191+|IPR037193+112-191+
|
SM00907+36-109_113-191+
|
PF02351+113-187+GDNF/GAS1_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-268
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
29442.690
|
5.583
|
-4.000
|
23.881
|
8.955
|
44.403
|
55.597
|
11.940
|
11.940
|
55.597
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
559.734
|
745.867
|
735.457
|
413.899
|
559.146
|
690.142
|
206.927
|
581.465
|
251.788
|
785.158
|
556.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.248
|
-0.987
|
-0.722
|
0.401
|
0.319
|
-1.727
|
-0.353
|
-1.347
|
— | — | — | — | — |