SCN Proteipedia

Hg_chrom6_TN10mRNA_12350

Organism: Heterodera glycines Gene Locus: chr6:6346174-6353865 Feature type: polypeptide

Protein Sequence

Length: 536

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.889	1.041	0.543	0.579	0.684	2.248	0.888	2.052	0.498	1.084	0.622	1.317	0.985	2.189	0.952	1.839	0.979	0.424	0.431	0.11	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11635	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.736

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKHRNIDAQRKLKKQ	—	—	17-57	0.995	—	—	0.000	—	—	0.871	0.100	0.014	0.326	0.052	0.038	0.057	0.058	0.054	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010662	1.000	1.000	Hsc_gene_24121.t1	Hsc_gene_24121.t1	—	Q9C056.2 Homeobox protein Nkx-6.2 [Homo sapiens]	KAF7637989.1 Homeobox domain-containing protein, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.889\|GO:0032502_0.761\|GO:0048856_0.761\|GO:0009987_0.756\|GO:0065007_0.727\|GO:0050789_0.725\|GO:0050794_0.725\|GO:0032501_0.702\|GO:0007275_0.658\|GO:0005575_0.645\|GO:0110165_0.644\|GO:0003674_0.632\|GO:0005488_0.632\|GO:0003676_0.611\|GO:0097159_0.611\|GO:0048731_0.596\|GO:0003677_0.584\|GO:0008152_0.582\|GO:0019222_0.582\|GO:0031323_0.582\|GO:0044237_0.582\|GO:0030154_0.580\|GO:0048869_0.580\|GO:0043565_0.576\|GO:0044238_0.576\|GO:0080090_0.576\|GO:0043170_0.571\|GO:0060255_0.571\|GO:0006139_0.570\|GO:0016070_0.570\|GO:0019219_0.570\|GO:0051252_0.570\|GO:0090304_0.570\|GO:0005622_0.568\|GO:0009058_0.564\|GO:0009059_0.564\|GO:0009889_0.564\|GO:0010556_0.564\|GO:0031326_0.564\|GO:0044249_0.564\|GO:0032774_0.563\|GO:0034654_0.563\|GO:0141187_0.563\|GO:0010467_0.560\|GO:0003690_0.556\|GO:0010468_0.556\|GO:1990837_0.556\|GO:0043226_0.551\|GO:0006351_0.538\|GO:0006355_0.538\|GO:2001141_0.538\|GO:0048513_0.524\|GO:0043229_0.511\|GO:0048519_0.508	IPR000047+397-406_406-422+\|IPR001356+366-426_368-430_369-425_369-427+\|IPR009057+349-426+\|IPR017970+401-424+\|IPR020479+390-401_405-415_415-424+\|IPR050394+51-481+	SM00389+368-430+	PF00046+369-425+Homeodomain	—	PTHR24340+51-481+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	full	1-536	0.000	—	3lnq_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.979	57461.080	9.155	20.000	19.963	8.582	52.052	47.948	12.873	7.090	57.276

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	turquoise	310.028	384.336	381.146	178.846	92.565	636.908	299.095	166.707	44.015	521.011	316.584

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.241	-1.241	-0.983	-0.985	2.799	-1.081	-2.041	0.986	—	—	—	—	—

No JSON data available for plots.

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