Hg_chrom6_TN10mRNA_12351
Organism: Heterodera glycines Gene Locus: chr6:6360260-6361310 Feature type: polypeptideProtein Sequence
Length: 186
(Signal peptide: 1-53)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.25 | 1.466 | 0.742 | 1.075 | 0.276 | 0.832 | 1.075 | 0.956 | 1.453 | 1.222 | 1.581 | 2.24 | 1.034 | 0.329 | 0.845 | 0.881 | 0.733 | 0.414 | 0.791 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11636
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_24123
|
— |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-53
|
— |
0.598
|
— |
0.000
|
0.069
|
0.177
|
0.178
|
0.092
|
0.432
|
0.134
|
0.134
|
0.008
|
0.333
|
0.870
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010663
|
1.000
|
1.000
|
Hsc_gene_24123.t1
|
Hsc_gene_24123.t1
|
— |
Q03575.1 Transthyretin-like protein 5 [Caenorhabditis elegans]
|
AVA09710.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
GO:0008150_0.936|GO:0005575_0.892|GO:0110165_0.883|GO:0009987_0.849|GO:0003674_0.846|GO:0016020_0.779|GO:0005488_0.764|GO:0005515_0.751|GO:0032502_0.730|GO:0048856_0.730|GO:0051179_0.729|GO:0071840_0.729|GO:0043226_0.728|GO:0016043_0.723|GO:0006810_0.721|GO:0051234_0.721|GO:0043227_0.711|GO:0071705_0.693|GO:0006996_0.692|GO:0008219_0.688|GO:0012501_0.688|GO:0033036_0.688|GO:0061024_0.687|GO:0006915_0.684|GO:0016192_0.682|GO:0016050_0.681|GO:0098657_0.678|GO:0006900_0.675|GO:0010324_0.675|GO:0010876_0.675|GO:0005102_0.674|GO:0006897_0.674|GO:0006869_0.673|GO:0042802_0.673|GO:0006909_0.670|GO:0006910_0.670|GO:0008037_0.670|GO:0015748_0.670|GO:0015914_0.670|GO:0015917_0.670|GO:0038024_0.670|GO:0043277_0.670|GO:0043654_0.670|GO:0060090_0.670|GO:1902742_0.670|GO:0008289_0.661|GO:0042803_0.659|GO:0046983_0.659|GO:0005543_0.656|GO:0030674_0.654|GO:0001786_0.650|GO:0005124_0.650|GO:0072341_0.650|GO:0005576_0.631|GO:0031982_0.590|GO:0043230_0.567|GO:0065010_0.567|GO:1903561_0.567|GO:0009986_0.565
|
IPR001534+40-185_70-152+|IPR038479+63-179+
|
— |
PF01060+70-152+Transthyretin-like_family
|
— |
PTHR21700+40-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
20646.540
|
4.642
|
-7.000
|
26.344
|
13.441
|
44.086
|
55.914
|
11.828
|
14.516
|
51.613
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
4176.586
|
1504.849
|
8151.142
|
2704.543
|
4686.186
|
5856.393
|
2023.372
|
17074.547
|
532.108
|
2123.098
|
1441.245
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.209
|
0.709
|
-1.483
|
0.761
|
0.337
|
-1.524
|
1.441
|
-2.935
|
— |
2.454
|
— | — | — |