SCN Proteipedia

Hg_chrom6_TN10mRNA_12355

Organism: Heterodera glycines Gene Locus: chr6:6376935-6382020 Feature type: polypeptide

Protein Sequence

Length: 1,004

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.042	0.996	0.887	0.962	0.93	1.66	0.83	1.942	0.598	0.956	0.528	1.64	0.941	1.207	1.199	1.38	0.718	0.981	0.919	0.85	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11639	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RREKGHRSGRRRKSD	—	—	—	—	—	—	0.000	—	—	0.156	0.070	0.017	0.260	0.167	0.469	0.189	0.055	0.806	0.107

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004415	2.000	1.000	Hsc_gene_24127.t1	Hsc_gene_24126.t1;Hsc_gene_24127.t1	—	G5EGK5.1 Tyrosine-protein kinase receptor cam-1 [Caenorhabditis elegans]	KAI1712487.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.957\|GO:0009987_0.863\|GO:0005575_0.833\|GO:0110165_0.808\|GO:0065007_0.801\|GO:0050789_0.793\|GO:0003674_0.785\|GO:0050794_0.781\|GO:0050896_0.733\|GO:0032502_0.698\|GO:0023052_0.697\|GO:0007154_0.696\|GO:0048856_0.694\|GO:0051716_0.680\|GO:0016020_0.663\|GO:0003824_0.658\|GO:0032501_0.658\|GO:0140096_0.658\|GO:0007165_0.629\|GO:0071944_0.620\|GO:0016740_0.617\|GO:0005488_0.610\|GO:0005886_0.606\|GO:0007275_0.568\|GO:0016772_0.556\|GO:0048518_0.548\|GO:0016301_0.538\|GO:0071840_0.536\|GO:0004672_0.535\|GO:0016773_0.535\|GO:0048522_0.534\|GO:0016043_0.529\|GO:0048731_0.523\|GO:0005622_0.513\|GO:0005515_0.512	IPR000001+229-313_230-314_231-312_232-312+\|IPR000719+588-863+\|IPR001245+592-858_669-682_717-735_767-777_786-808_830-852+\|IPR008266+723-735+\|IPR011009+618-869+\|IPR013806+227-318+\|IPR020067+58-197+\|IPR020635+602-859+\|IPR036790+60-198+\|IPR038178+199-318+\|IPR050122+184-865+	SM00130+230-314+\|SM00219+602-859+	PF00051+232-312+Kringle_domain\|PF07714+592-858+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:1.10.510.10:FF:001512+689-883+Receptor_tyrosine-protein_kinase_erbB-2	PTHR24416+184-865+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-41;384-586;871-1004	2.000	42-383;587-870	6tu9_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.782	110641.920	6.868	8.500	23.705	11.355	48.506	51.494	13.247	10.458	54.681

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	2924.847	7077.492	2886.501	2505.590	2367.701	1961.904	4648.629	1938.622	320.451	3785.954	2300.738

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.523	-1.635	-0.095	—	-0.257	1.255	—	1.404	-3.686	—	—	—	—

No JSON data available for plots.

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