Hg_chrom6_TN10mRNA_12356
Organism: Heterodera glycines Gene Locus: chr6:6376935-6387956 Feature type: polypeptideProtein Sequence
Length: 1,194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.032 | 1.052 | 0.944 | 0.866 | 0.879 | 1.654 | 0.808 | 1.968 | 0.596 | 0.905 | 0.558 | 1.626 | 0.861 | 1.224 | 1.214 | 1.376 | 0.728 | 1.015 | 0.838 | 0.985 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11639
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RREKGHRSGRRRKSD
|
— | — |
41-63
|
0.994
|
— | — |
0.000
|
— | — |
0.160
|
0.069
|
0.017
|
0.267
|
0.179
|
0.389
|
0.181
|
0.049
|
0.803
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004415
|
2.000
|
1.000
|
Hsc_gene_24127.t1
|
Hsc_gene_24126.t1;Hsc_gene_24127.t1
|
— |
G5EGK5.1 Tyrosine-protein kinase receptor cam-1 [Caenorhabditis elegans]
|
KAI1712487.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0005515|GO:0005524|GO:0006468
|
GO:0008150_0.958|GO:0009987_0.863|GO:0005575_0.834|GO:0110165_0.810|GO:0003674_0.792|GO:0065007_0.788|GO:0050789_0.779|GO:0050794_0.770|GO:0050896_0.721|GO:0032502_0.701|GO:0048856_0.697|GO:0007154_0.679|GO:0023052_0.678|GO:0016020_0.668|GO:0051716_0.667|GO:0003824_0.663|GO:0140096_0.663|GO:0032501_0.659|GO:0016740_0.620|GO:0071944_0.619|GO:0005488_0.616|GO:0007165_0.613|GO:0005886_0.602|GO:0007275_0.570|GO:0016772_0.557|GO:0016301_0.540|GO:0048518_0.539|GO:0016773_0.537|GO:0004672_0.535|GO:0071840_0.534|GO:0016043_0.531|GO:0048522_0.525|GO:0048731_0.525|GO:0005515_0.516|GO:0005622_0.507
|
IPR000001+419-503_420-504_421-502_422-502+|IPR000719+778-1053+|IPR001245+782-1048_859-872_907-925_957-967_976-998_1020-1042+|IPR003598+53-121+|IPR003599+47-132+|IPR007110+39-130+|IPR008266+913-925+|IPR011009+808-1059+|IPR013098+43-131+|IPR013783+36-144+|IPR013806+417-508+|IPR020067+248-387+|IPR020635+792-1049+|IPR036179+38-131+|IPR036790+250-388+|IPR038178+389-508+|IPR050122+121-1055+
|
SM00130+420-504+|SM00219+792-1049+|SM00408+53-121+|SM00409+47-132+
|
PF00051+422-502+Kringle_domain|PF07679+43-131+Immunoglobulin_I-set_domain|PF07714+782-1048+Protein_tyrosine_and_serine/threonine_kinase
|
G3DSA:1.10.510.10:FF:001512+879-1073+Receptor_tyrosine-protein_kinase_erbB-2
|
PTHR24416+121-1055+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
117-238;574-776;1061-1194
|
3.000
|
1-116;239-573;777-1060
|
6tu9_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
131820.370
|
7.010
|
13.500
|
24.037
|
11.474
|
49.079
|
50.921
|
13.568
|
10.469
|
55.025
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
2924.847
|
7077.492
|
2886.501
|
2505.590
|
2367.701
|
1961.904
|
4648.629
|
1938.622
|
320.451
|
3785.954
|
2300.738
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.523
|
-1.635
|
-0.095
|
— |
-0.257
|
1.255
|
— |
1.404
|
-3.686
|
— | — | — | — |
No JSON data available for plots.