Hg_chrom6_TN10mRNA_12357
Organism: Heterodera glycines Gene Locus: chr6:6384896-6387314 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.093 | 1.093 | 1.098 | 0.463 | 0.783 | 0.86 | 0.719 | 0.336 | 0.895 | 0.907 | 0.61 | 1.974 | 0.932 | 1.549 | 1.644 | 0.959 | 1.1 | 1.119 | 0.516 | 1.382 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11639
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — |
41-63
|
0.994
|
— | — |
0.000
|
— | — |
0.195
|
0.338
|
0.044
|
0.376
|
0.053
|
0.037
|
0.088
|
0.075
|
0.369
|
0.774
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_24127.t1
|
— |
G5EGK5.1 Tyrosine-protein kinase receptor cam-1 [Caenorhabditis elegans]
|
KAH7723172.1 Protein CAM-1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.792|GO:0005575_0.766|GO:0110165_0.758|GO:0009987_0.632|GO:0016020_0.546|GO:0032501_0.537|GO:0032502_0.503|GO:0048856_0.503|GO:0003674_0.501
|
IPR003598+53-121+|IPR003599+47-132+|IPR007110+39-130+|IPR013098+43-130+|IPR013783+36-138+|IPR036179+38-130+|IPR050958+41-129+
|
SM00408+53-121+|SM00409+47-132+
|
PF07679+43-130+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000017+38-132+Down_syndrome_cell_adhesion_molecule_b
|
PTHR45080+41-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.854
|
16560.820
|
8.444
|
2.500
|
23.490
|
9.396
|
44.966
|
55.034
|
12.752
|
10.738
|
56.376
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
2924.847
|
7077.492
|
2886.501
|
2505.590
|
2367.701
|
1961.904
|
4648.629
|
1938.622
|
320.451
|
3785.954
|
2300.738
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.523
|
-1.635
|
-0.095
|
— |
-0.257
|
1.255
|
— |
1.404
|
-3.686
|
— | — | — | — |
No JSON data available for plots.