Hg_chrom6_TN10mRNA_12361
Organism: Heterodera glycines Gene Locus: chr6:6399929-6401457 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 1.16 | 1.007 | 0.573 | 1.016 | 0.781 | 0.627 | 1.247 | 1.416 | 1.348 | 0.797 | 1.792 | 2.078 | 0.799 | 1.244 | 1.029 | 0.681 | 0.923 | 0.639 | 1.141 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11643
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.931
|
0.004
|
0.000
|
— |
0.176
|
0.559
|
0.035
|
0.066
|
0.907
|
0.186
|
0.257
|
0.146
|
0.144
|
0.291
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010668
|
1.000
|
1.000
|
Hsc_gene_24131.t1
|
Hsc_gene_24131.t1
|
— |
Q68G38.1 Torsin-1A [Rattus norvegicus]
|
KAI1712472.1 torsin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0005783|GO:0016887|GO:0051085
|
GO:0005575_0.874|GO:0110165_0.872|GO:0016020_0.819|GO:0005622_0.796|GO:0043226_0.760|GO:0005737_0.758|GO:0043229_0.747|GO:0071944_0.746|GO:0043227_0.736|GO:0005886_0.734|GO:0043231_0.724|GO:0008150_0.689|GO:0003674_0.688|GO:0005773_0.640|GO:0012505_0.621|GO:0009987_0.564|GO:0005488_0.540|GO:0005783_0.509|GO:0005515_0.501
|
IPR001270+112-130_182-200_211-225+|IPR010448+50-345_56-183+|IPR017378+6-345+|IPR027417+67-322_68-318+|IPR049337+286-342+
|
— |
PF06309+56-183+Torsin|PF21376+286-342+Torsin-1A,_C-terminal_domain
|
G3DSA:3.40.50.300:FF:002276+64-285+Torsin,_putative
|
PTHR10760+50-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-361
|
6oif_Y
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.657
|
41421.640
|
7.172
|
3.500
|
25.485
|
14.681
|
44.875
|
55.125
|
13.850
|
11.634
|
45.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
898.875
|
735.892
|
609.366
|
585.908
|
721.099
|
1094.789
|
1206.085
|
1264.972
|
703.514
|
1073.151
|
914.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.502
|
-0.466
|
— |
0.269
|
0.617
|
— | — | — | — | — | — | — | — |