Hg_chrom6_TN10mRNA_12364
Organism: Heterodera glycines Gene Locus: chr6:6407374-6409019 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.427 | 1.138 | 1.001 | 1.265 | 0.917 | 1.333 | 0.801 | 1.223 | 1.019 | 1.24 | 0.973 | 0.72 | 1.359 | 1.059 | 1.685 | 1.092 | 1.003 | 0.927 | 0.235 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11646
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
KHKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.366
|
0.206
|
0.055
|
0.283
|
0.059
|
0.035
|
0.063
|
0.040
|
0.246
|
0.753
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002336
|
1.000
|
3.000
|
Hsc_gene_24134.t1;Hsc_gene_24134.t2;Hsc_gene_24134.t3
|
— | — |
Q22710.4 Zinc metalloproteinase nas-26 [Caenorhabditis elegans]
|
KAH7729492.1 Protein HCH-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.935|GO:0032501_0.777|GO:0032502_0.606|GO:0048856_0.606|GO:0007275_0.585|GO:0005575_0.516|GO:0110165_0.512
|
IPR000859+213-320+|IPR035914+206-325_213-318+
|
SM00042+213-320+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-66
|
1.000
|
67-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
36999.200
|
9.158
|
16.000
|
28.135
|
9.786
|
51.988
|
48.012
|
17.125
|
11.009
|
49.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
72.105
|
22.592
|
26.694
|
11.525
|
14.024
|
91.272
|
290.456
|
19.544
|
52.411
|
97.613
|
78.241
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.108
|
-1.103
|
— |
2.715
|
1.681
|
-2.335
|
4.038
|
— | — | — | — | — |
No JSON data available for plots.