Hg_chrom6_TN10mRNA_12365
Organism: Heterodera glycines Gene Locus: chr6:6409047-6410737 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 1.15 | 0.999 | 1.421 | 0.687 | 1.057 | 0.883 | 1.374 | 0.794 | 1.188 | 0.541 | 0.485 | 0.992 | 0.687 | 1.626 | 1.295 | 1.081 | 1.29 | 2.113 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11647
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.577
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRTAAGLYFPPRRRHP
|
28-48
|
0.963
|
— | — | — | — |
0.000
|
— | — |
0.317
|
0.567
|
0.004
|
0.578
|
0.054
|
0.277
|
0.142
|
0.079
|
0.266
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010671
|
1.000
|
1.000
|
Hsc_gene_24135.t1
|
Hsc_gene_24135.t1
|
— | — |
KAI1712480.1 WD repeat-containing protein 31 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.828|GO:0110165_0.828|GO:0008150_0.797|GO:0005622_0.725|GO:0009987_0.655|GO:0043226_0.602|GO:0043229_0.591|GO:0016020_0.576|GO:0043227_0.516|GO:0043231_0.509
|
IPR001680+41-79_82-123_84-122_89-132_126-165_169-208_173-208_258-302_260-301_265-311+|IPR015943+37-248_249-361+|IPR019775+289-303+|IPR020472+110-124_152-166_289-303+|IPR036322+44-331+|IPR040066+46-317+
|
SM00320+41-79_82-123_126-165_169-208_258-302+
|
PF00400+84-122_173-208_260-301+WD_domain,_G-beta_repeat
|
— |
PTHR19869+46-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-364
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
40376.700
|
8.340
|
12.000
|
23.901
|
10.440
|
48.626
|
51.374
|
14.286
|
9.615
|
56.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
165.375
|
309.429
|
352.859
|
162.254
|
57.491
|
58.745
|
107.309
|
246.709
|
31.595
|
214.271
|
135.981
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.069
|
-1.012
|
-1.529
|
— |
0.879
|
1.966
|
-1.059
|
— | — | — | — | — |
No JSON data available for plots.