Hg_chrom6_TN10mRNA_12367
Organism: Heterodera glycines Gene Locus: chr6:6412558-6414345 Feature type: polypeptideProtein Sequence
Length: 361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 1.031 | 0.453 | 0.764 | 0.877 | 1.136 | 0.791 | 1.524 | 0.616 | 1.123 | 0.462 | 1.955 | 1.385 | 1.172 | 0.961 | 1.543 | 0.817 | 1.175 | 0.852 | 1.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11649
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — |
57-84
|
0.991
|
— | — |
0.000
|
— | — |
0.215
|
0.790
|
0.053
|
0.115
|
0.127
|
0.150
|
0.124
|
0.098
|
0.142
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010673
|
1.000
|
1.000
|
Hsc_gene_24137.t1
|
Hsc_gene_24137.t1
|
— |
Q23125.1 Mitoferrin [Caenorhabditis elegans]
|
KAI1712481.1 mitochondrial carrier protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0055085
|
GO:0005575_0.864|GO:0110165_0.861|GO:0016020_0.793|GO:0008150_0.779|GO:0005622_0.765|GO:0043226_0.728|GO:0005737_0.725|GO:0043229_0.716|GO:0043227_0.708|GO:0009987_0.697|GO:0043231_0.693|GO:0003674_0.659|GO:0051179_0.559|GO:0051234_0.550|GO:0006810_0.547|GO:0005739_0.510
|
IPR002067+33-51_79-97_124-146+|IPR018108+18-106_18-109_115-199_115-202_206-305_206-308+|IPR023395+4-150_17-301_151-331+
|
— |
PF00153+18-109_115-202_206-308+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000029+3-206+Solute_carrier_family_25_member_28
|
PTHR45758+6-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
39822.220
|
7.439
|
5.500
|
18.560
|
13.850
|
43.213
|
56.787
|
10.803
|
7.756
|
54.294
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.