Hg_chrom6_TN10mRNA_12368
Organism: Heterodera glycines Gene Locus: chr6:6414643-6415239 Feature type: polypeptideProtein Sequence
Length: 112
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.142 | 1.038 | 0.974 | 1.232 | 0.595 | 0.916 | 0.957 | 0.893 | 0.794 | 1.207 | 1.488 | 1.05 | 0.992 | 0.515 | 0.911 | 1.531 | 0.732 | 0.947 | 1.374 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11650
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.116
|
0.827
|
0.152
|
0.214
|
0.215
|
0.025
|
0.039
|
0.223
|
0.067
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010674
|
1.000
|
1.000
|
Hsc_gene_24138.t1
|
Hsc_gene_24138.t1
|
— |
B3M1H7.1 CDGSH iron-sulfur domain-containing protein 2 homolog [Drosophila ananassae]
|
KAI6174672.1 ZnF-CDGSH domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010506|GO:0043231|GO:0051537
|
GO:0005575_0.928|GO:0110165_0.928|GO:0005622_0.821|GO:0016020_0.819|GO:0008150_0.810|GO:0043226_0.795|GO:0043229_0.783|GO:0005737_0.761|GO:0043227_0.738|GO:0043231_0.725|GO:0009987_0.638|GO:0008152_0.521|GO:0044237_0.521
|
IPR018967+57-95_58-90+|IPR042216+63-109+|IPR045131+15-109+
|
SM00704+57-95+
|
PF09360+58-90+Iron-binding_zinc_finger_CDGSH_type
|
G3DSA:3.40.5.90:FF:000001+63-110+CDGSH_iron-sulfur_domain-containing_protein_1
|
PTHR13680+15-109+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-112
|
7yvz_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
12150.920
|
9.655
|
7.000
|
25.000
|
8.929
|
48.214
|
51.786
|
16.071
|
8.929
|
55.357
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
sienna3
|
2020.535
|
828.323
|
1492.350
|
1590.534
|
1810.899
|
1672.699
|
1628.192
|
1237.524
|
2854.593
|
2851.199
|
2852.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
0.804
|
0.202
|
0.155
|
— | — |
-0.539
|
0.539
|
— | — | — | — | — |
No JSON data available for plots.