Hg_chrom6_TN10mRNA_12372
Organism: Heterodera glycines Gene Locus: chr6:6420519-6422115 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.383 | 0.709 | 0.665 | 0.315 | 1.067 | 0.704 | 1.161 | 1.067 | 1.016 | 1.154 | 0.878 | 1.435 | 1.44 | 0.704 | 1.244 | 1.002 | 0.65 | 1.247 | 0.938 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11654
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — |
19-43
|
0.910
|
— | — | — | — |
0.000
|
— | — |
0.241
|
0.582
|
0.237
|
0.298
|
0.472
|
0.129
|
0.155
|
0.145
|
0.209
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010678
|
1.000
|
1.000
|
Hsc_gene_24142.t1
|
Hsc_gene_24142.t1
|
— |
Q96LJ7.1 Dehydrogenase/reductase SDR family member 1 [Homo sapiens]
|
KAI1715198.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.657|GO:0005575_0.629|GO:0110165_0.629|GO:0008150_0.584|GO:0003824_0.548|GO:0016020_0.520|GO:0005622_0.501
|
IPR002347+11-217_12-29_98-109_152-168_177-196_198-215_238-258+|IPR020904+164-192+|IPR036291+8-272+
|
— |
PF00106+11-217+short_chain_dehydrogenase
|
— |
PTHR44147+7-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-328
|
2qq5_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
35620.890
|
9.422
|
9.500
|
24.085
|
11.280
|
40.854
|
59.146
|
14.024
|
10.061
|
52.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey60
|
1864.706
|
1732.327
|
1391.424
|
1348.536
|
1923.927
|
1646.184
|
3665.589
|
1177.028
|
3033.156
|
1051.339
|
1900.689
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.546
|
-0.498
|
— |
0.481
|
-0.211
|
1.167
|
-0.590
|
1.783
|
— | — | — | — | — |
No JSON data available for plots.