Hg_chrom6_TN10mRNA_12373
Organism: Heterodera glycines Gene Locus: chr6:6422299-6425702 Feature type: polypeptideProtein Sequence
Length: 601
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 1.006 | 0.575 | 0.344 | 0.915 | 0.512 | 0.753 | 1.331 | 0.998 | 1.956 | 0.555 | 1.664 | 2.034 | 1.152 | 1.494 | 1.284 | 0.436 | 0.882 | 1.152 | 0.294 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11655
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.368
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
RRVLNCPKIGRRARE,RKFRGKFPKVAELRRMAR,KKAPGAILNRSIWRRNKL
|
— | — | — | — |
1-23
|
0.627
|
0.591
|
1.000
|
1.000
|
0.129
|
0.090
|
0.048
|
0.148
|
0.839
|
0.210
|
0.438
|
0.068
|
0.352
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010679
|
1.000
|
1.000
|
Hsc_gene_24143.t1
|
— | — |
A0A291PQH4.1 UDP-glucosyltransferase 2 [Dactylopius coccus]
|
KAI1715197.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.836|GO:0003674_0.751|GO:0009987_0.678|GO:0003824_0.622|GO:0016740_0.583|GO:0005575_0.579|GO:0110165_0.579|GO:0016757_0.554|GO:0008194_0.545|GO:0008152_0.541|GO:0016020_0.529
|
IPR002213+233-488_262-558+|IPR035595+387-430+|IPR050271+31-543+
|
— |
PF00201+262-558+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+31-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
601-601
|
1.000
|
1-600
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
67028.110
|
10.128
|
22.000
|
22.296
|
12.479
|
40.266
|
59.734
|
13.644
|
8.652
|
47.255
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
38.951
|
37.125
|
23.790
|
52.062
|
24.388
|
19.180
|
64.100
|
31.044
|
2.056
|
74.484
|
43.443
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.872
|
— |
1.240
|
-1.126
|
— |
1.751
|
— |
1.188
|
-5.168
|
4.762
|
— | — | — |