Hg_chrom6_TN10mRNA_12374
Organism: Heterodera glycines Gene Locus: chr6:6428746-6430716 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.617 | 0.926 | 1.126 | 0.915 | 0.959 | 0.851 | 0.764 | 1.327 | 0.787 | 1.226 | 0.737 | 0.781 | 2.028 | 1.149 | 2.032 | 0.853 | 0.653 | 0.838 | 1.872 | 1.106 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11656
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.557
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRR,RKFIVETIRLGRKLRPK,KRARKFIVETIRLGRKLRP
|
— | — | — | — | — |
0.515
|
0.238
|
0.000
|
— |
0.163
|
0.319
|
0.041
|
0.402
|
0.302
|
0.198
|
0.241
|
0.168
|
0.260
|
0.839
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010680
|
1.000
|
1.000
|
Hsc_gene_24145.t1
|
Hsc_gene_24145.t1
|
— |
Q12794.2 Hyaluronidase-1 [Homo sapiens]
|
KAF7626029.1 Hyaluronidase [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004415|GO:0005975
|
GO:0008150_0.870|GO:0005575_0.783|GO:0110165_0.783|GO:0003674_0.725|GO:0003824_0.612|GO:0009987_0.586|GO:0016020_0.568|GO:0008152_0.544|GO:0016787_0.536|GO:0005622_0.519
|
IPR013785+44-452+|IPR017853+49-389+|IPR018155+32-426_44-416_48-392+
|
— |
PF01630+48-392+Hyaluronidase
|
— |
PTHR11769+44-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
52853.230
|
9.153
|
19.000
|
29.425
|
16.150
|
46.681
|
53.319
|
17.478
|
11.947
|
46.018
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
176.448
|
124.153
|
217.014
|
174.693
|
41.371
|
114.433
|
67.731
|
1272.178
|
23.496
|
0.000
|
10.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
0.355
|
— |
-2.106
|
1.479
|
-0.741
|
3.377
|
-4.087
|
— | — | — | — | — |