Hg_chrom6_TN10mRNA_12376
Organism: Heterodera glycines Gene Locus: chr6:6433513-6435782 Feature type: polypeptideProtein Sequence
Length: 261
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.846 | 0.802 | 0.766 | 0.528 | 0.639 | 2.063 | 0.547 | 0.575 | 1.022 | 2.071 | 0.929 | 0.902 | 2.341 | 0.81 | 0.938 | 0.93 | 0.942 | 1.045 | 0.295 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11658
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.572
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
26-66
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.090
|
0.117
|
0.152
|
0.085
|
0.349
|
0.388
|
0.294
|
0.005
|
0.584
|
0.078
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010682
|
1.000
|
1.000
|
Hsc_gene_24146.t1
|
— | — |
P34410.3 TWiK family of potassium channels protein 7 [Caenorhabditis elegans]
|
MCP9261332.1 TWiK family of potassium channels protein 7 [Dirofilaria immitis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.886|GO:0009987_0.854|GO:0051179_0.809|GO:0051234_0.807|GO:0006810_0.804|GO:0003674_0.759|GO:0005575_0.757|GO:0110165_0.757|GO:0016020_0.730|GO:0055085_0.707|GO:0006811_0.673|GO:0034220_0.673|GO:0098660_0.657|GO:0005215_0.654|GO:0006812_0.654|GO:0022857_0.654|GO:0098655_0.650|GO:0030001_0.649|GO:0098662_0.646|GO:0015075_0.628|GO:0022803_0.623|GO:0005216_0.622|GO:0015267_0.622|GO:0006813_0.620|GO:0071805_0.620|GO:0005886_0.602|GO:0071944_0.602|GO:0008324_0.589|GO:0015318_0.586|GO:0022890_0.580|GO:0046873_0.580|GO:0005261_0.577|GO:0005267_0.568|GO:0015079_0.568
|
IPR003280+30-200+|IPR013099+50-128+
|
— |
PF07885+50-128+Ion_channel
|
— |
PTHR11003+30-200+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-261
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.748
|
29412.400
|
9.682
|
8.500
|
19.923
|
11.494
|
43.678
|
56.322
|
11.877
|
8.046
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
486.883
|
78.807
|
571.510
|
475.845
|
726.882
|
1072.813
|
504.498
|
897.130
|
18.961
|
493.087
|
289.890
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.630
|
2.458
|
-0.156
|
0.579
|
0.577
|
-1.081
|
-0.366
|
-0.688
|
-4.837
|
4.858
|
— | — | — |
No JSON data available for plots.