Hg_chrom6_TN10mRNA_12378
Organism: Heterodera glycines Gene Locus: chr6:6437554-6441276 Feature type: polypeptideProtein Sequence
Length: 695
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.037 | 1.506 | 0.785 | 0.695 | 0.839 | 1.439 | 0.6 | 1.439 | 0.895 | 1.556 | 0.567 | 1.439 | 1.479 | 0.802 | 1.086 | 1.295 | 0.778 | 0.676 | 1.328 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11660
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— |
RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.518
|
0.246
|
0.011
|
0.391
|
0.106
|
0.519
|
0.523
|
0.066
|
0.117
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010684
|
1.000
|
1.000
|
Hsc_gene_24148.t1
|
Hsc_gene_24148.t1
|
— | — |
KAI1718042.1 ER-Golgi trafficking TRAPP I complex 85 kDa subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.961|GO:0008152_0.787|GO:0005575_0.695|GO:0110165_0.692|GO:0009058_0.681|GO:0009987_0.645|GO:0005622_0.612|GO:0032963_0.586|GO:0032964_0.586|GO:0005737_0.535
|
IPR024420+13-563_13-622+
|
— |
PF12739+13-563+ER-Golgi_trafficking_TRAPP_I_complex_85_kDa_subunit
|
— |
PTHR12975+13-622+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
267-352
|
2.000
|
1-266;353-695
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
78256.760
|
7.239
|
8.000
|
21.295
|
13.094
|
47.194
|
52.806
|
11.942
|
9.353
|
49.209
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1162.007
|
1810.951
|
1106.495
|
887.102
|
1083.266
|
1064.692
|
1708.907
|
1290.396
|
1100.624
|
901.383
|
986.772
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.940
|
-1.167
|
-0.211
|
0.256
|
— |
0.693
|
— |
0.548
|
— | — | — | — | — |
No JSON data available for plots.