SCN Proteipedia

Hg_chrom6_TN10mRNA_12379

Organism: Heterodera glycines Gene Locus: chr6:6441356-6442713 Feature type: polypeptide

Protein Sequence

Length: 298

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.702	1.171	1.037	1.273	1.007	1.463	0.599	1.007	0.82	1.134	0.61	1.184	1.678	0.903	1.301	1.39	1.54	0.661	0.516	0.395	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11661	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.921	0.079	0.024	0.358	0.023	0.028	0.034	0.009	0.033	0.144

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010685	1.000	1.000	Hsc_gene_24149.t1	Hsc_gene_24149.t1	—	—	KAF7626032.1 c-SKI_SMAD_bind domain-containing protein [Meloidogyne graminicola]	No	0.080

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046332	GO:0005575_0.884\|GO:0110165_0.880\|GO:0008150_0.836\|GO:0003674_0.791\|GO:0065007_0.787\|GO:0050789_0.777\|GO:0009987_0.770\|GO:0005488_0.766\|GO:0005622_0.766\|GO:0050794_0.763\|GO:0016020_0.762\|GO:0043226_0.703\|GO:0050896_0.685\|GO:0043229_0.681\|GO:0043227_0.674\|GO:0005515_0.657\|GO:0051716_0.655\|GO:0043231_0.651\|GO:0048519_0.650\|GO:0048523_0.636\|GO:0023052_0.628\|GO:0007154_0.622\|GO:0007165_0.613\|GO:0005634_0.591\|GO:0008152_0.581\|GO:0023051_0.573\|GO:0048583_0.573\|GO:0010646_0.572\|GO:0019222_0.566\|GO:0043170_0.566\|GO:0044238_0.563\|GO:0032501_0.561\|GO:0009966_0.560\|GO:0007166_0.558\|GO:0031323_0.557\|GO:0044237_0.557\|GO:0009719_0.552\|GO:0032502_0.549\|GO:0048856_0.549\|GO:0060255_0.549\|GO:0009058_0.545\|GO:0009059_0.545\|GO:0044249_0.545\|GO:0080090_0.543\|GO:0010467_0.539\|GO:0048585_0.539\|GO:0009968_0.535\|GO:0010648_0.535\|GO:0023057_0.535\|GO:0071495_0.532\|GO:0009889_0.528\|GO:0010556_0.527\|GO:0031326_0.527\|GO:0070848_0.527\|GO:0007167_0.526\|GO:0071363_0.525\|GO:0007275_0.523\|GO:0006139_0.521\|GO:0007178_0.521\|GO:0010468_0.521\|GO:0141091_0.520\|GO:0090092_0.519\|GO:0090287_0.519\|GO:0090304_0.516\|GO:0034654_0.514\|GO:0090101_0.514\|GO:0141187_0.513\|GO:0016070_0.509\|GO:0032774_0.509\|GO:0019219_0.506\|GO:0051252_0.504\|GO:0006351_0.501\|GO:0048731_0.501	IPR003380+73-173+\|IPR009061+77-172+\|IPR010919+192-273_193-290+\|IPR014890+192-274_192-283+\|IPR023216+30-271+\|IPR037000+72-176+	SM01046+192-283+	PF02437+73-173+SKI/SNO/DAC_family\|PF08782+192-274+c-SKI_Smad4_binding_domain	—	PTHR10005+30-271+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-74;294-298	1.000	75-293	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.686	33326.370	6.232	-1.000	24.161	10.067	54.027	45.973	12.416	11.745	53.691

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	yellowgreen	752.914	672.255	466.808	318.737	402.544	392.730	1222.815	525.759	418.218	1479.717	1024.789

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.757	-1.214	-0.441	0.304	—	1.650	0.317	1.361	—	—	—	—	—

No JSON data available for plots.

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