Hg_chrom6_TN10mRNA_12381
Organism: Heterodera glycines Gene Locus: chr6:6464418-6466629 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.352 | 0.85 | 0.544 | 0.687 | 0.388 | 1.107 | 1.107 | 1.163 | 1.255 | 1.392 | 0.503 | 0.586 | 2.123 | 1.086 | 0.61 | 0.475 | 0.98 | 1.46 | 1.022 | 1.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11663
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
5-33
|
0.852
|
— | — | — | — |
0.000
|
— | — |
0.051
|
0.162
|
0.011
|
0.256
|
0.294
|
0.561
|
0.233
|
0.025
|
0.727
|
0.132
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010687
|
1.000
|
1.000
|
Hsc_gene_24151.t1
|
Hsc_gene_24151.t1;Hsc_gene_24151.t2
|
— |
O43315.2 Aquaporin-9 [Homo sapiens]
|
KAI1705861.1 major intrinsic protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015267|GO:0016020|GO:0055085
|
GO:0008150_0.910|GO:0005575_0.851|GO:0110165_0.851|GO:0009987_0.830|GO:0071944_0.799|GO:0006810_0.773|GO:0051179_0.773|GO:0051234_0.773|GO:0016020_0.769|GO:0055085_0.757|GO:0005886_0.753|GO:0003674_0.746|GO:0005215_0.617|GO:0022857_0.617|GO:0006833_0.550|GO:0042044_0.550|GO:0015850_0.543|GO:0015791_0.530|GO:0015267_0.526|GO:0022803_0.526|GO:0008643_0.519|GO:0034219_0.516
|
IPR000425+14-254_16-35_16-257_56-80_93-112_156-174_188-210_237-257+|IPR023271+9-262_15-260+|IPR050363+2-269+
|
— |
PF00230+14-254+Major_intrinsic_protein
|
— |
PTHR43829+2-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
278-301
|
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
32686.030
|
8.224
|
6.500
|
13.953
|
15.947
|
31.229
|
68.771
|
8.638
|
5.316
|
54.153
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
2117.464
|
4436.598
|
3637.602
|
1403.087
|
1357.941
|
2350.791
|
3298.347
|
5505.601
|
386.270
|
727.964
|
581.524
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.515
|
-1.798
|
-1.266
|
— |
0.806
|
0.497
|
1.125
|
-0.599
|
— | — | — | — | — |
No JSON data available for plots.