Hg_chrom6_TN10mRNA_12383
Organism: Heterodera glycines Gene Locus: chr6:6473903-6475876 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.238 | 1.268 | 1.275 | 0.806 | 0.693 | 1.132 | 0.711 | 1.299 | 0.75 | 1.229 | 0.945 | 1.07 | 0.577 | 0.999 | 1.537 | 1.558 | 0.511 | 0.787 | 0.2 | 0.764 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11665
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRQK,RLRKRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.594
|
0.265
|
0.019
|
0.570
|
0.132
|
0.119
|
0.125
|
0.056
|
0.242
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001366
|
1.000
|
4.000
|
Hsc_gene_24155.t1;Hsc_gene_24155.t2;Hsc_gene_24155.t3;Hsc_gene_24155.t4
|
Hsc_gene_24154.t1;Hsc_gene_24155.t1;Hsc_gene_24155.t3;Hsc_gene_24155.t4
|
— |
P83757.1 NF-kappa-B inhibitor cactus [Drosophila yakuba]
|
RYE01960.1 MAG: ankyrin repeat domain-containing protein [Sphingobacteriaceae bacterium]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.807|GO:0005575_0.790|GO:0110165_0.790|GO:0016020_0.699|GO:0009987_0.686|GO:0005622_0.684|GO:0043226_0.680|GO:0043227_0.642|GO:0043229_0.621|GO:0043231_0.578|GO:0005737_0.561|GO:0065007_0.528|GO:0050789_0.520|GO:0050794_0.509
|
IPR002110+220-309_249-278_249-281_281-310_281-313+|IPR036770+218-360_220-322+
|
SM00248+249-278_281-310+
|
PF12796+220-309+Ankyrin_repeats_(3_copies)
|
— |
PTHR24171+108-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-142
|
1.000
|
143-385
|
6nhv_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.932
|
42038.270
|
9.172
|
15.000
|
27.532
|
7.532
|
51.429
|
48.571
|
16.364
|
11.169
|
55.844
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1372.606
|
1745.275
|
1372.154
|
1097.187
|
1046.852
|
973.263
|
1418.025
|
1375.443
|
1640.573
|
1389.148
|
1496.901
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.577
|
-0.807
|
-0.214
|
— | — |
0.554
|
0.393
|
— | — | — | — | — | — |
No JSON data available for plots.