Hg_chrom6_TN10mRNA_12386
Organism: Heterodera glycines Gene Locus: chr6:6482868-6486270 Feature type: polypeptideProtein Sequence
Length: 591
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.63 | 0.831 | 0.525 | 1.156 | 0.998 | 0.765 | 0.931 | 1.241 | 1.395 | 0.795 | 2.09 | 1.692 | 0.944 | 1.381 | 1.015 | 0.555 | 1.154 | 1.171 | 0.647 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11668
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.854
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-24
|
0.887
|
0.668
|
4.000
|
4.000
|
0.050
|
0.072
|
0.020
|
0.143
|
0.377
|
0.349
|
0.466
|
0.018
|
0.733
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010691
|
1.000
|
1.000
|
Hsc_gene_24161.t1
|
Hsc_gene_24161.t1;Hsc_gene_3507.t1
|
— |
Q61603.3 Glycine receptor subunit alpha-4 [Mus musculus]
|
KAI1712536.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.958|GO:0009987_0.924|GO:0005575_0.918|GO:0110165_0.899|GO:0016020_0.871|GO:0005886_0.815|GO:0071944_0.815|GO:0006810_0.806|GO:0051179_0.806|GO:0051234_0.806|GO:0065007_0.802|GO:0050789_0.770|GO:0003674_0.768|GO:0055085_0.757|GO:0007154_0.718|GO:0023052_0.718|GO:0006811_0.704|GO:0034220_0.704|GO:0050896_0.690|GO:0050794_0.673|GO:0007267_0.660|GO:0032501_0.656|GO:0030054_0.645|GO:0051716_0.637|GO:0045202_0.636|GO:0099536_0.636|GO:0099537_0.636|GO:0005215_0.635|GO:0022857_0.635|GO:0098916_0.634|GO:0007268_0.633|GO:0015075_0.592|GO:0065008_0.589|GO:0022803_0.577|GO:0005216_0.576|GO:0015267_0.576|GO:0007165_0.570|GO:0098660_0.554|GO:0022836_0.551|GO:0003008_0.549|GO:0042391_0.541|GO:0022834_0.530|GO:0015276_0.529|GO:0050877_0.519|GO:0005230_0.518
|
IPR006028+425-445_451-472_485-506_552-572+|IPR006029+429-519+|IPR006201+216-517+|IPR006202+211-419+|IPR036719+423-573+|IPR036734+207-419_216-421+|IPR038050+420-588+
|
— |
PF02931+211-419+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+429-519+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000055+420-583+Ligand-Gated_ion_Channel
|
PTHR18945+216-517+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
121-199;588-591
|
2.000
|
1-120;200-587
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
66731.440
|
8.050
|
8.500
|
25.381
|
11.675
|
42.470
|
57.530
|
13.875
|
11.506
|
46.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
82.579
|
30.668
|
131.258
|
62.396
|
33.669
|
50.647
|
31.120
|
60.681
|
1.028
|
210.347
|
120.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.862
|
0.888
|
-0.960
|
-0.922
|
0.603
|
-0.693
|
— |
-0.819
|
— |
5.830
|
— | — | — |