SCN Proteipedia

Hg_chrom6_TN10mRNA_12393

Organism: Heterodera glycines Gene Locus: chr6:6512548-6514179 Feature type: polypeptide

Protein Sequence

Length: 251

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.556	1.482	0.362	1.099	1.262	2.145	0.427	1.793	0.708	1.077	0.785	1.172	1.66	1.379	1.545	1.366	0.914	0.483	0.613	0.703	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11675	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.887

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	5-27	0.964	10-46	0.987	—	—	0.000	—	—	0.360	0.160	0.015	0.671	0.093	0.141	0.069	0.065	0.111	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010698	1.000	1.000	Hsc_gene_24169.t1	Hsc_gene_24169.t1	—	P47979.1 Zinc finger protein zfs1 [Schizosaccharomyces pombe 972h-]	KAI1705825.1 zinc finger c-x8-C-x5-C-x3-H type (and similar) domain-containing protein [Ditylenchus destructor]	No	0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003729\|GO:0046872	GO:0008150_0.901\|GO:0065007_0.848\|GO:0050789_0.845\|GO:0009987_0.833\|GO:0050794_0.833\|GO:0005575_0.792\|GO:0110165_0.792\|GO:0003674_0.774\|GO:0005488_0.774\|GO:0008152_0.743\|GO:0019222_0.743\|GO:0031323_0.743\|GO:0044237_0.743\|GO:0005622_0.740\|GO:0043170_0.734\|GO:0060255_0.729\|GO:0044238_0.725\|GO:0080090_0.725\|GO:0009058_0.722\|GO:0009059_0.722\|GO:0010467_0.722\|GO:0044249_0.722\|GO:0009889_0.714\|GO:0031326_0.709\|GO:0010468_0.708\|GO:0010556_0.708\|GO:0048519_0.675\|GO:0048523_0.662\|GO:0048518_0.648\|GO:0003676_0.643\|GO:0097159_0.643\|GO:0009892_0.608\|GO:0005737_0.605\|GO:0006139_0.602\|GO:0010605_0.600\|GO:0031324_0.598\|GO:0090304_0.597\|GO:0003723_0.595\|GO:0009893_0.593\|GO:0016070_0.592\|GO:0009890_0.588\|GO:0031327_0.588\|GO:0010558_0.586\|GO:0003729_0.581\|GO:0010604_0.580\|GO:0019219_0.554\|GO:0051252_0.554\|GO:0043226_0.548\|GO:0043229_0.537\|GO:0010629_0.536\|GO:0010608_0.530\|GO:0050896_0.510\|GO:0003730_0.501	IPR000571+60-87_60-88_61-87_102-129_102-130_103-128+\|IPR036855+60-92_101-129+\|IPR045877+19-185+	SM00356+60-87_102-129+	PF00642+61-87_103-128+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)	G3DSA:4.10.1000.10:FF:000001+54-93+zinc_finger_CCCH_domain-containing_protein_15-like\|G3DSA:4.10.1000.10:FF:000018+98-131+Zinc_finger_protein	PTHR12547+19-185+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;163-251	1.000	2-162	1m9o_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.926	29052.740	9.068	12.500	25.896	12.749	55.777	44.223	16.335	9.562	45.418

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	black	507.561	35.725	79.834	61.712	213.224	1142.255	2298.873	1438.135	7.195	239.022	139.668

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.926	0.650	—	1.758	2.435	1.020	—	0.823	—	—	—	—	—

No JSON data available for plots.

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