Hg_chrom6_TN10mRNA_12396
Organism: Heterodera glycines Gene Locus: chr6:6521689-6523206 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 0.976 | 1.144 | 0.241 | 1.224 | 0.807 | 0.624 | 1.573 | 1.088 | 1.087 | 1.166 | 0.617 | 2.04 | 0.672 | 1.284 | 0.949 | 1.032 | 1.113 | 0.269 | 1.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11678
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.334
|
0.246
|
0.051
|
0.509
|
0.258
|
0.422
|
0.357
|
0.051
|
0.228
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010701
|
1.000
|
1.000
|
Hsc_gene_24172.t2
|
Hsc_gene_24172.t1;Hsc_gene_24172.t2
|
— |
Q8WTM6.1 Probable actin-related protein 2/3 complex subunit 2 [Caenorhabditis elegans]
|
KAI1729629.1 arp2/3 complex, 34 kD subunit p34-Arc domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005885|GO:0015629|GO:0030041|GO:0034314
|
GO:0005575_0.808|GO:0110165_0.806|GO:0005622_0.758|GO:0008150_0.754|GO:0009987_0.698|GO:0043226_0.586|GO:0043229_0.567|GO:0005737_0.540
|
IPR007188+8-279_42-270+|IPR034666+1-117_2-106_107-270_119-270+
|
— |
PF04045+42-270+Arp2/3_complex,_34_kD_subunit_p34-Arc
|
G3DSA:3.30.1460.20:FF:000002+119-270+Arp2/3_complex_34_kDa_subunit|G3DSA:3.30.1460.20:FF:000004+1-117+Arp2/3_complex_34_kDa_subunit
|
PTHR12058+8-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
277-286
|
1.000
|
1-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
32965.340
|
7.955
|
5.500
|
30.769
|
15.385
|
51.049
|
48.951
|
17.133
|
13.636
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
darkturquoise
|
990.582
|
808.702
|
927.566
|
798.140
|
942.289
|
1067.929
|
1081.324
|
1155.471
|
1380.048
|
755.727
|
1023.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.156
|
— |
0.207
|
0.195
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.