Hg_chrom6_TN10mRNA_12397
Organism: Heterodera glycines Gene Locus: chr6:6524594-6526880 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.268 | 0.909 | 0.705 | 1.136 | 2.681 | 0.731 | 0.909 | 1.061 | 0.891 | 0.723 | 2.273 | 0.947 | 0.699 | 1.391 | 1.234 | 1.006 | 0.689 | 0.874 | 0.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.480
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,RRKR
|
38-60
|
0.970
|
— | — | — | — |
0.000
|
— | — |
0.956
|
0.100
|
0.014
|
0.168
|
0.006
|
0.029
|
0.032
|
0.029
|
0.022
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010702
|
1.000
|
1.000
|
Hsc_gene_24173.t1
|
Hsc_gene_24173.t1
|
— | — |
KAF7635016.1 MADF domain-containing protein [Meloidogyne graminicola]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006578+57-156_58-151+|IPR039353+35-429+
|
SM00595+57-156+
|
PF10545+58-151+Alcohol_dehydrogenase_transcription_factor_Myb/SANT-like
|
— |
PTHR12243+35-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
160-398
|
2.000
|
1-159;399-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
49641.620
|
7.102
|
3.000
|
25.227
|
7.727
|
55.909
|
44.091
|
13.409
|
11.818
|
48.182
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
1378.623
|
8749.051
|
1369.595
|
260.943
|
418.350
|
492.241
|
1552.865
|
1147.912
|
175.023
|
653.601
|
448.496
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.906
|
-5.204
|
-2.283
|
0.650
|
0.248
|
1.669
|
1.133
|
— | — | — | — | — | — |
No JSON data available for plots.