Hg_chrom6_TN10mRNA_12403
Organism: Heterodera glycines Gene Locus: chr6:6538070-6542397 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 0.824 | 0.994 | 0.866 | 1.477 | 1.023 | 0.791 | 1.551 | 1.083 | 1.317 | 0.649 | 1.825 | 1.354 | 0.682 | 1.779 | 1.118 | 0.702 | 0.739 | 0.909 | 0.608 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.755
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRTDIENLIYELIECRKRL
|
7-28
|
0.992
|
1-34
|
1.000
|
— | — |
0.000
|
— | — |
0.319
|
0.214
|
0.043
|
0.575
|
0.083
|
0.345
|
0.337
|
0.062
|
0.197
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010708
|
1.000
|
1.000
|
Hsc_gene_24179.t1
|
Hsc_gene_24179.t1
|
— |
A8K855.1 EF-hand calcium-binding domain-containing protein 7 [Homo sapiens]
|
KAF7637973.1 EF-hand domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.911|GO:0110165_0.909|GO:0016020_0.824|GO:0043226_0.800|GO:0043227_0.743|GO:0071944_0.711|GO:0005886_0.699|GO:0032991_0.656|GO:0008150_0.614|GO:0098590_0.585|GO:0042995_0.582|GO:0120025_0.580|GO:0005622_0.578|GO:0009987_0.563|GO:0030990_0.556|GO:0005929_0.555|GO:0065007_0.511
|
IPR002048+452-482+|IPR011992+450-515+|IPR018247+460-472+|IPR052266+439-556+
|
— | — | — |
PTHR46819+439-556+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
209-331
|
2.000
|
1-208;332-677
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
77219.670
|
6.617
|
1.500
|
30.428
|
11.226
|
50.074
|
49.926
|
16.100
|
14.328
|
45.199
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
818.150
|
1589.179
|
1725.834
|
516.109
|
199.688
|
97.014
|
134.799
|
1080.243
|
345.596
|
1316.633
|
900.475
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.110
|
-1.760
|
-1.633
|
-1.400
|
-1.028
|
0.483
|
3.376
|
-2.864
|
— | — | — | — | — |
No JSON data available for plots.