SCN Proteipedia

Hg_chrom6_TN10mRNA_12406

Organism: Heterodera glycines Gene Locus: chr6:6549485-6555207 Feature type: polypeptide

Protein Sequence

Length: 1,361

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.735	1.128	0.708	0.456	0.845	0.98	0.726	1.065	1.6	1.757	0.635	1.513	1.572	0.763	1.41	1.029	0.855	1.002	1.3	0.67	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_11688	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.959

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	KRIR,RRRHK,KKAFKLSNGTRRDRT	—	—	—	—	—	—	0.000	—	—	0.092	0.131	0.005	0.101	0.422	0.689	0.398	0.051	0.659	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010711	1.000	1.000	Hsc_gene_24182.t1	Hsc_gene_24182.t1	—	Q9U2G5.3 Multidrug resistance protein mrp-7 [Caenorhabditis elegans]	KAI1706940.1 ABC transporter transmembrane region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0055085\|GO:0140359	GO:0008150_0.906\|GO:0005575_0.830\|GO:0110165_0.830\|GO:0016020_0.784\|GO:0009987_0.728\|GO:0071944_0.717\|GO:0005886_0.711\|GO:0051179_0.641\|GO:0006810_0.627\|GO:0051234_0.627\|GO:0003674_0.612\|GO:0050896_0.563\|GO:0055085_0.545	IPR003439+466-695_483-622_1119-1353_1138-1284+\|IPR003593+492-672_1145-1330+\|IPR011527+119-391_119-403_791-1082_792-1062+\|IPR017871+594-608+\|IPR027417+440-714_470-692_1103-1356_1111-1351+\|IPR036640+105-420_107-417_758-1099_791-1097+\|IPR050173+11-1354+	SM00382+492-672_1145-1330+	PF00005+483-622_1138-1284+ABC_transporter\|PF00664+119-391_792-1062+ABC_transporter_transmembrane_region	G3DSA:1.20.1560.10:FF:000001+756-1100+ATP-binding_cassette_subfamily_C_member_1\|G3DSA:1.20.1560.10:FF:000081+93-420+Protein_CBG24505\|G3DSA:3.40.50.300:FF:000074+1103-1353+Multidrug_resistance-associated_protein_5_isoform_1\|G3DSA:3.40.50.300:FF:000997+448-715+Multidrug_resistance-associated_protein_1	PTHR24223+11-1354+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;706-760	2.000	3-705;761-1361	6bzr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.810	154152.450	9.617	43.500	22.190	11.756	43.277	56.723	13.226	8.964	45.481

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	magenta	666.474	434.634	609.986	425.057	904.470	678.139	1683.366	976.880	18.642	759.642	442.070

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.259	-0.169	-0.412	1.058	-0.402	1.323	—	0.926	-5.482	4.723	—	—	—

No JSON data available for plots.

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