Hg_chrom6_TN10mRNA_12408
Organism: Heterodera glycines Gene Locus: chr6:6557858-6559359 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.296 | 0.75 | 1.066 | 0.303 | 1.271 | 1.504 | 0.698 | 0.733 | 0.652 | 1.189 | 1.688 | 1.553 | 0.733 | 1.015 | 1.736 | 0.754 | 0.625 | 0.489 | 0.677 | 0.863 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_11690
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRKRRL,HPSPKPEGPRQQRPAGQQAKKGKRRRAANGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.922
|
0.175
|
0.000
|
0.266
|
0.381
|
0.041
|
0.134
|
0.009
|
0.025
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010713
|
1.000
|
1.000
|
Hsc_gene_24184.t1
|
Hsc_gene_24184.t1
|
— |
P91240.2 Signal recognition particle subunit SRP72 [Caenorhabditis elegans]
|
KAI1706944.1 SRP72 RNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006614|GO:0008312|GO:0048500
|
GO:0005575_0.949|GO:0110165_0.947|GO:0005622_0.910|GO:0005737_0.749|GO:0005829_0.647|GO:0043226_0.603|GO:0016020_0.591|GO:0043229_0.586|GO:0003674_0.534|GO:0005488_0.534|GO:0043227_0.512
|
IPR011990+1-88_25-176+|IPR013699+222-266+|IPR019734+30-63_145-178+|IPR026270+186-335+|IPR031545+1-77+
|
SM00028+30-63_145-178+
|
PF08492+222-266+SRP72_RNA-binding_domain|PF17004+1-77+Putative_TPR-like_repeat
|
— |
PTHR14094+186-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
197-341
|
1.000
|
1-196
|
5wrw_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
38674.190
|
10.371
|
23.500
|
34.604
|
7.918
|
52.786
|
47.214
|
21.114
|
13.490
|
44.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1096.731
|
743.426
|
943.112
|
1312.903
|
1659.934
|
1531.292
|
1111.896
|
765.863
|
1585.087
|
583.722
|
1012.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.684
|
0.586
|
0.306
|
— |
-0.452
|
-1.102
|
0.679
|
— | — | — | — | — |
No JSON data available for plots.